LOC_Os11g32110

Expression Profile

RGAP LOCUS ID LOC_Os11g32110
RAP-DB ID Os11g0523800
Function auxin response factor, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization Nuclear
score 14

2) CELLO Prediction
localization Nuclear
score 2.591

3) NUCPRED Prediction
localization Non Nuclear
score 0.45

4) Y-Loc Prediction
localization Nuclear
score 94.84
confidence value 0.67
Number Of Software Predicting Nucleus 3
Seed Specific No
Transcription factor category ARF

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsARF1
Function assigned as per literature OsARF1 can be classified as a primary auxin responsive gene, a class of genes that is auxin-induced even in the absence of de novo protein synthesis and likely to play an important role in mediating the growth-stimulating effect of auxin
Subcellular localization as per literature Nucleus
Cells used for localization experiment Tobacco protoplasts
NUCLEAR or Not Nuclear NUCLEAR
PMID 12369618
Reference of localization https://link.springer.com/article/10.1023/A:1019818110761
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 2
Number of Bipartite 0
Basic residues % 0.109
NLS score 0.22
Protein Sequence >LOC_Os11g32110.1 protein
MATAEVGGGGGEGDAAAAAVARAGGGGGGGGGGGEDALFTELWSACAGPLVTVPRVGEKVFYFPQGHIEQVEASTNQVGEQRMQLYNLPWKILCEVMNVE
LKAEPDTDEVYAQLTLLPESKQQEDNGSTEEEVPSAPAAGHVRPRVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPPTQELVAKDLHGVEWR
FRHIFRGQPRRHLLQSGWSVFVSAKRLVAGDAFIFLRGENGELRVGVRRAMRQQTNVPSSVISSHSMHLGVLATAWHAVNTGTMFTVYYKPRTSPAEFVV
PYDRYMESLKQNYSIGMRFKMRFEGEEAPEQRFTGTIVGMGDSDPAGWPESKWRSLKVRWDEASSIPRPERVSPWQIEPAVSPPPVNPLPVPRTKRLRPN
ATALPADSSAIAKEAATKVVVESEPNGTQRTFQTQENATPKSGFGNSSELESAQKSIMRPSGFDREKNNTPIQWKLGSDGRMQMSKPESYSEMLSGFQPP
KDVQIPQGFCSLPEQITAGHSNFWHTVNAQYQDQQSNHNMFPSSWSFMPPNTRLGLNKQNYSMIQEAGVLSQRPGNTKFGNGVYAALPGRGTEQYSGGWF
GHMMPNSHMDDTQPRLIKPKPLVVAHGDVQKAKGASCKLFGIHLDSPAKSEPLKSPSSVVYDGTPQTPGATEWRRPDVTEVEKCSDPSKAMKPLDTPQPD
SVPEKPSSQQASRNMSCKSQGVSTRSCKKVHKQGIALGRSVDLTKFNGYEELIAELDDMFDFNGELKGPKKEWMVVYTDNEGDMMLVGDDPWIEFCDMVH
KIFIYTREEVQRMNPGTLNSRSEDSHANSMERGSVGREMRGCLSTSSLNSENC

GO Analysis
1
GO Category Biological Process
GO Term biosynthetic process
2
GO Category Biological Process
GO Term nucleobase, nucleoside, nucleotide and nucleic acid metabolic process
3
GO Category Cellular comBiological Processonent
GO Term nucleus
4
GO Category Biological Process
GO Term reproduction
5
GO Category Biological Process
GO Term multicellular organismal development
6
GO Category Biological Process
GO Term abscission
7
GO Category Biological Process
GO Term flower development
8
GO Category Biological Process
GO Term response to endogenous stimulus
9
GO Category Molecular Function
GO Term protein binding
10
GO Category Molecular Function
GO Term DNA binding
11
GO Category Molecular Function
GO Term sequence-specific DNA binding transcription factor activity
12
GO Category Cellular comBiological Processonent
GO Term plastid
13
GO Category Biological Process
GO Term cellular process
Presence of Splice variants YES