LOC_Os11g30560

Expression Profile

RGAP LOCUS ID LOC_Os11g30560
RAP-DB ID Os11g0499600
Function dehydrogenase/reductase, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization chlo
score 12

2) CELLO Prediction
localization Mitochondrial
score 1.077

3) NUCPRED Prediction
localization Non Nuclear
score 0

4) Y-Loc Prediction
localization Chloroplast
score 4
confidence value 0.22
Number Of Software Predicting Nucleus 0
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsHSD1|LGF1
Function assigned as per literature OsHSD1 is involved in cuticle formation and lipid homeostasis
Subcellular localization as per literature Oil bodies and endoplasmic reticulum (ER)
Cells used for localization experiment Rice and Arabidopsis protoplasts
NUCLEAR or Not Nuclear NOT NUCLEAR
PMID 27297988
Reference of localization https://www.sciencedirect.com/science/article/pii/S0168945216300747
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.11
NLS score -0.47
Protein Sequence >LOC_Os11g30560.1 protein
MAKEAFVNGFLSVFMHVGLTLVLLVYLPIAFACRALGRLLVRPFVSGEDLRGKVVLVTGASSGIGEHLVYEYAKKGACVALTARTEIALRAVAKTARDLG
APDVLVVPADITKVDDAKRAVEETVAHFGKLNHLVANAGIWSSCFFEEITNITAFHNVIDLNFWGAVYPTYFALPYLKASRGNIVVTSSVAGRVPTARMS
FYNASKGAVIRFYETLRAELGSHVRVTILTPGYVVSNLTMGKGIQKDGHVGIDEEARDINVGPLPVGKTETLAKVVVAAVRRGDYYVTWPGWYWPFHMVM
CTAPELVDWFSRTFYVSKSSDHDGDALSKKILEAVGGKKFLYPKTIRSHAIAAS

GO Analysis
1
GO Category Biological Process
GO Term response to endogenous stimulus
2
GO Category Molecular Function
GO Term catalytic activity
3
GO Category Biological Process
GO Term metabolic process
4
GO Category Biological Process
GO Term lipid metabolic process
5
GO Category Cellular comBiological Processonent
GO Term cell
Presence of Splice variants No