LOC_Os11g29850

Expression Profile

RGAP LOCUS ID LOC_Os11g29850
RAP-DB ID Os11g0490800
Function ABC transporter, ATP-binding protein, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization chlo
score 8

2) CELLO Prediction
localization Mitochondrial
score 2.144

3) NUCPRED Prediction
localization Non Nuclear
score 0.47

4) Y-Loc Prediction
localization Chloroplast
score 9
confidence value 0.7
Number Of Software Predicting Nucleus 0
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsABCI8|TSC1
Function assigned as per literature OsABCI8 represents a conserved ABCI protein involved in transition metals transportation and/or homeostasis and has important role in chloroplast development
Subcellular localization as per literature Chloroplasts
Cells used for localization experiment rice protoplast cells and onion (Allium cepa) cells
NUCLEAR or Not Nuclear NOT NUCLEAR
PMID 28285416
Reference of localization https://link.springer.com/article/10.1007%2Fs11103-017-0598-4
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 2
Number of Bipartite 0
Basic residues % 0.125
NLS score 0.22
Protein Sequence >LOC_Os11g29850.1 protein
MQVVGTAAAFSPAVTPSPARRRAVDSGRRFSRSCRSGRVSVSAVGYSQLEVRRVSYRPPGTEQNLLNEISLNLKEKSFGLLFGRSGSGKTTLLQLLAGLS
EPTHGTICIQKYNDSGNPMGPPELLTAQRVGIVFQFPERYFLADTVLEEITFGWPRQNTDFLFREKLALKLQNAINSVGLNGISLEEDPQSLSGGFKRRL
ALAIQLVQTPDLLLLDEPLAGLDWKARADVVNLLKDLKKDHTILAVSHDLRELYPLVDRSWRMEMGGVLKEEALSVSKQMQAELQWRDN

GO Analysis
1
GO Category Biological Process
GO Term transport
2
GO Category Cellular comBiological Processonent
GO Term membrane
3
GO Category Molecular Function
GO Term transporter activity
4
GO Category Cellular comBiological Processonent
GO Term plastid
Presence of Splice variants YES