LOC_Os11g29400

Expression Profile

RGAP LOCUS ID LOC_Os11g29400
RAP-DB ID Os11g0484500
Function 6-phosphogluconate dehydrogenase, decarboxylating, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization chlo
score 12

2) CELLO Prediction
localization Chloroplast
score 2.733

3) NUCPRED Prediction
localization Non Nuclear
score 0.05

4) Y-Loc Prediction
localization Chloroplast
score 7
confidence value 0.59
Number Of Software Predicting Nucleus 0
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) Os6PGDH2
Function assigned as per literature
Subcellular localization as per literature NA
Cells used for localization experiment
NUCLEAR or Not Nuclear
PMID
Reference of localization
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.11
NLS score -0.47
Protein Sequence >LOC_Os11g29400.1 protein
MASPAPAPPAASSSAAGSAPPPRIGLAGLATMGQNLALNIAEKGFPISVYNRTAAKVDATVSRAEAEGALPVLGHRDPRGFVLSLSRPRTVVLLVQAGRA
VDATIDALVPYLDAGDAIVDGGNEWYQNTERRIEEAAARGILYLGMGVSGGEEGARNGPSLMPGGHIDAYNNIRDILEKAAAQTEDGACVTFVGPGGAGN
FVKMVHNGIEYGDMQLIAEAYDVLRRVGGLSNSEIADVFAEWNRGELESFLVEITADIFTVADPLDGSGGGGLVDKILDKTGMKGTGKWTVQQAAELAIA
APTIAASLDGRYLSGLKDERVAAAGVLEAEGMPSGLLETINVDKKMLVDRVRQALYASKICSYAQGMNLLRAKSVEKGWNLNLAELARIWKGGCIIRAKF
LDRIKKAYDRNPELANLIVDREFAREMVQRQNAWRWVVARAVEAGISTPGMSASLSYFDTYRCSRLPANLIQAQRDLFGAHTYERIDRPGSFHTEWTKLA
RKSNGAAI

GO Analysis
1
GO Category Biological Process
GO Term metabolic process
2
GO Category Cellular comBiological Processonent
GO Term cytosol
3
GO Category Biological Process
GO Term biological_process
4
GO Category Cellular comBiological Processonent
GO Term mitochondrion
5
GO Category Cellular comBiological Processonent
GO Term plastid
6
GO Category Molecular Function
GO Term catalytic activity
7
GO Category Cellular comBiological Processonent
GO Term cellular_component
8
GO Category Molecular Function
GO Term binding
9
GO Category Molecular Function
GO Term nucleotide binding
Presence of Splice variants No