LOC_Os11g29290

Expression Profile

RGAP LOCUS ID LOC_Os11g29290
RAP-DB ID Os11g0483000
Function cytochrome P450, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization chlo
score 13

2) CELLO Prediction
localization Chloroplast
score 2.224

3) NUCPRED Prediction
localization Non Nuclear
score 0.27

4) Y-Loc Prediction
localization Chloroplast
score 9
confidence value 0.66
Number Of Software Predicting Nucleus 0
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) HAN1
Function assigned as per literature HAN1 gene confers chilling tolerance in rice and allowed adaptation to a temperate climate.
Subcellular localization as per literature Endoplasmic reticulum
Cells used for localization experiment Rice protoplasts and tobacco leaves
NUCLEAR or Not Nuclear NOT NUCLEAR
PMID 30808744
Reference of localization https://www.pnas.org/content/116/9/3494.long
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.122
NLS score -0.47
Protein Sequence >LOC_Os11g29290.1 protein
MAWFVAAWSCLLVVVMVSSMRLSRSASSSCGSSCGHGGWGPRSYPVIGCLVAFYRNRRRLLDWYTEMLAASPSQTIVVDRLGARRTVVTANPANVEHILR
ARFANYPKGKPFTDVLGDLLGMGIFNVDGELWHAQRKLVSHEFSARALRDLEVTVLEAEARDRLVPALAAASRGGGVVDMQDVLRRFAFDVICRVSLGVD
PGCLDPALPAPRLAAAFDTAAGIIARRGAAPVAAVWKVKRALDAGSERRLREEVGVIHEAVMGLIRSRRKERALLLVNGNGVGGGGGARSDLLSRMIECG
YPDEAIRDMVISFIMAGRDTTSSALTWFFWLLMRHRGVEAQVLDEIAATRRARGAGEEGGDDGEGEGLDLDDYRRMRVLHAALCETMRLYPPVAWDSKHA
AADDVLPDGTAVGRGDRVTYFQYGMGRMEAIWGADAADFSLDRWLSLPRGGGDGAAAASPAAAAFAGVSPFKYPVFQGGPRTCLGKEMAFVQMKFVASAV
LRRFELRPVDEGRTPAFVPLMTAHMAGGLNVTVRRRTPAPATSTAANGTGGELTSS

GO Analysis
1
GO Category Biological Process
GO Term flower development
2
GO Category Biological Process
GO Term response to stress
3
GO Category Biological Process
GO Term reproduction
4
GO Category Biological Process
GO Term multicellular organismal development
5
GO Category Molecular Function
GO Term oxygen binding
6
GO Category Cellular comBiological Processonent
GO Term cell
7
GO Category Biological Process
GO Term response to biotic stimulus
8
GO Category Biological Process
GO Term cellular process
9
GO Category Biological Process
GO Term lipid metabolic process
Presence of Splice variants No