LOC_Os11g28360

Expression Profile

RGAP LOCUS ID LOC_Os11g28360
RAP-DB ID Os11g0473200
Function ubiquitin carboxyl-terminal hydrolase 5, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization Nuclear
score 6

2) CELLO Prediction
localization Nuclear
score 1.718

3) NUCPRED Prediction
localization Non Nuclear
score 0.24

4) Y-Loc Prediction
localization Cytoplasm
score 59
confidence value 0.73
Number Of Software Predicting Nucleus 2
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) FLA
Function assigned as per literature FLA plays an important role in the development of floral organs and chloroplast in rice
Subcellular localization as per literature Plasma Membrane
Cells used for localization experiment Nicotiana benthamiana epidermal cells
NUCLEAR or Not Nuclear NOT NUCLEAR
PMID 30603810
Reference of localization https://link.springer.com/article/10.1007%2Fs00299-018-2368-4
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.076
NLS score -0.47
Protein Sequence >LOC_Os11g28360.1 protein
MEMEMEMVVAVPSPEVPAEEERALIRDITVAAEAHAKEGDTFFLITHRWWQSWIDYVIQDLANSTNNGSHHHEHGSNVLRRPGAIDNTDLIDDTASEVSN
MEIELHDTLVEGRDYILLPQQVWEKLHGWYGGGPTLPRKAINTGLSQTDLAIEVYPLRLQLLLAPKGEQAVIRISKKDTVGELHKKACEVFDLIPDEVCI
WDYYGRTRHSLMDNLEKTLDDANIQMDQDILVEVTTDANGSLDGGCIGSIQENEYLERESTSLIADASKSGLSNENFASNNYTSRSYSSSLTQSQYLRSS
NGDLDNMHGTSAMITRGSPLGLTGLLNLGNTCFMNSAIQCLVHTPEFARYFREDYHREINWQNPLGMVVSTLSTSMALKPYV

GO Analysis
1
GO Category Molecular Function
GO Term hydrolase activity
2
GO Category Cellular comBiological Processonent
GO Term nucleus
3
GO Category Biological Process
GO Term protein metabolic process
4
GO Category Biological Process
GO Term catabolic process
5
GO Category Biological Process
GO Term cellular process
6
GO Category Biological Process
GO Term metabolic process
Presence of Splice variants No