LOC_Os11g26160

Expression Profile

RGAP LOCUS ID LOC_Os11g26160
RAP-DB ID Os11g0448400
Function RNA polymerase sigma factor, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization chlo
score 14

2) CELLO Prediction
localization Nuclear
score 1.424

3) NUCPRED Prediction
localization Nuclear
score 0.91

4) Y-Loc Prediction
localization Chloroplast
score 9
confidence value 0.31
Number Of Software Predicting Nucleus 2
Seed Specific No
Transcription factor category Sigma70-like

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsSIG2A
Function assigned as per literature
Subcellular localization as per literature NA
Cells used for localization experiment
NUCLEAR or Not Nuclear
PMID
Reference of localization
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 3
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.152
NLS score 0.34
Protein Sequence >LOC_Os11g26160.1 protein
MACLAPHFKWAPCPHAHHHHSTSSLPSSSSSSTSAPSSSSRCSFSRGGPFRVHCAVTATTSAAAPVVVEAPGGGMRLAYAAAPDSSAPALQKKIQSALAS
EVFLNEEAVVTAAAAEAVALARAAAEAAQEVVRMVQNNKNERNTRPKKAVVNYLANEILRTEMKPNILDKYSDGILSEEIESYGILSDEAELDGDTQDIP
SIAVKSARQTERRARRTRAAIKAATIVRTSPKPATSSKKKRSKGASSGTNPLGSLWKMTGRRLLTAKEEVEFSEGIQDLLKLEAIQAELAEYNGGQPTFA
QWATAAGVDERTLRKRLDHGIYCKNRMVTSNVRLVISIAREFEGPGMELYDLIQEGMQGLIRGAEKFDASKGFRFSTYSHWWIKQAMRKSVSEQSQIFRL
PAHMVEASYRVKECIKRLRRKLKRRPTNEEIAADTGMPIKRVEAAVNLPKYSVSLDSKIGSTDMTYQEVTADPTAETAEEMLNRLSMKRDVHKALDTLTT
RERQVVTLRFGLEDGRIRTLQEIGNTMGVSRERIRQIESAAFRKLRSKKRVNALKDYLVPVGNW

GO Analysis
1
GO Category Molecular Function
GO Term DNA binding
2
GO Category Biological Process
GO Term biosynthetic process
3
GO Category Biological Process
GO Term nucleobase, nucleoside, nucleotide and nucleic acid metabolic process
4
GO Category Biological Process
GO Term response to abiotic stimulus
5
GO Category Molecular Function
GO Term transferase activity
6
GO Category Molecular Function
GO Term molecular_function
7
GO Category Molecular Function
GO Term sequence-specific DNA binding transcription factor activity
8
GO Category Cellular comBiological Processonent
GO Term plastid
Presence of Splice variants No