LOC_Os11g19060

Expression Profile

RGAP LOCUS ID LOC_Os11g19060
RAP-DB ID Os11g0295900
Function BABY BOOM 1, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization Nuclear
score 7

2) CELLO Prediction
localization Nuclear
score 1.155

3) NUCPRED Prediction
localization Non Nuclear
score 0.22

4) Y-Loc Prediction
localization Nuclear
score 96.82
confidence value 0.3
Number Of Software Predicting Nucleus 3
Seed Specific Yes
Transcription factor category AP2-EREBP

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) BBM1|OsASGR-BBML1
Function assigned as per literature BBM1 is involved in initiation of embryogenesis after fertilization in flowering plants
Subcellular localization as per literature Nucleus
Cells used for localization experiment Rice sperm cells
NUCLEAR or Not Nuclear NUCLEAR
PMID 30542157
Reference of localization https://www.nature.com/articles/s41586-018-0785-8
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.084
NLS score -0.47
Protein Sequence >LOC_Os11g19060.1 protein
MASITNWLGFSSSSFSGAGADPVLPHPPLQEWGSAYEGGGTVAAAGGEETAAPKLEDFLGMQVQQETAAAAAGHGRGGSSSVVGLSMIKNWLRSQPPPAV
VGGEDAMMALAVSTSASPPVDATVPACISPDGMGSKAADGGGAAEAAAAAAAQRMKAAMDTFGQRTSIYRGVTKHRWTGRYEAHLWDNSCRREGQTRKGR
QVNAGGYDKEEKAARAYDLAALKYWGTTTTTNFPVSNYEKELDEMKHMNRQEFVASLRRKSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGT
FGTQEEAAEAYDIAAIKFRGLNAVTNFDMSRYDVKSIIESSNLPIGTGTTRRLKDSSDHTDNVMDINVNTEPNNVVSSHFTNGVGNYGSQHYGYNGWSPI
SMQPIPSQYANGQPRAWLKQEQDSSVVTAAQNLHNLHHFSSLGYTHNFFQQSDVPDVTGFVDAPSRSSDSYSFRYNGTNGFHGLPGGISYAMPVATAVDQ
GQGIHGYGEDGVAGIDTTHDLYGSRNVYYLSEGSLLADVEKEGDYGQSVGGNSWVLPTP

GO Analysis
1
GO Category Biological Process
GO Term anatomical structure morphogenesis
2
GO Category Biological Process
GO Term multicellular organismal development
3
GO Category Molecular Function
GO Term DNA binding
4
GO Category Cellular comBiological Processonent
GO Term nucleus
5
GO Category Biological Process
GO Term biosynthetic process
6
GO Category Biological Process
GO Term nucleobase, nucleoside, nucleotide and nucleic acid metabolic process
7
GO Category Molecular Function
GO Term sequence-specific DNA binding transcription factor activity
Presence of Splice variants No