LOC_Os11g16290

Expression Profile

RGAP LOCUS ID LOC_Os11g16290
RAP-DB ID Os11g0264300
Function NIN, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization Nuclear
score 11

2) CELLO Prediction
localization Nuclear
score 3.673

3) NUCPRED Prediction
localization Non Nuclear
score 0.62

4) Y-Loc Prediction
localization Nuclear
score 77.1
confidence value 0.2
Number Of Software Predicting Nucleus 3
Seed Specific No
Transcription factor category RWP-RK/Nin-like

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsNIN-like4
Function assigned as per literature OsNIN-like4 may be associated with the salt and drought stress tolerance
Subcellular localization as per literature Nucleus and cytosol
Cells used for localization experiment Onion epidermal cells
NUCLEAR or Not Nuclear NUCLEAR
PMID 27766460
Reference of localization https://link.springer.com/article/10.1007%2Fs11103-016-0547-7
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 1
Number of Bipartite 0
Basic residues % 0.116
NLS score -0.13
Protein Sequence >LOC_Os11g16290.1 protein
MDMLMLSSALDGLDSYTDLVAGSSVADSIFSALTCFPPSQERLLHVSTPVGSNSRQDDSDVSITKEGTTTRRGDCAAGLASGEPVAAGIGSVPKPFDGVT
LTERMLRALAMLKEASGGEAILVQVWMPVRNGEQHVLTTSDQPFLLDQKLTGYREVSRQFTFSAEEGPGLFPGLPGRVFMSGMPEWTSNVMYYHGSEYLR
VDYARRHEVRGSLAMPVFNSSGGSCCAVLEVVMTREKDNFCLEMVNVSNALQSVQLSTVNAWRHSQSYSRDQKLALMEIFDVLQAVCQAHLLPLALAWIP
VCSKRDVLVSVEYGANFGKRNKEVLCIEESACYVNDTRMRDFVQVCAEHPLEKGQGVAGNAYLSNNPFFSSDVKDYDMHAYPLVNHARKFGLHAAVAIRL
QSTYTKNDDYVLEFFLPVLCKGGGEQQLLLDSISATMRRVCKSLRTVSDAELKEDVTRKPSNENRSGTRCPSPVNLIYSGREIDVSNETKTNTPLEYQIE
GIDEQLSDTKSTNKLIKCSNASDGEKRRSSTEKSVSLSVLQQYFSGSLKDAAKSIGVCPTTLKRICRQHGISRWPSRKIKKVNRSLKKIQNVISSVHGVE
GVLKYDPSTGCLVSSVSPSIEPVLMNVEHKGSDPLPIESELPHLNFEPDCDAYRREHAGQDVLHKLQNKQNGEINFDMDDGELFRNSHSTRTLSGAFCED
MPNGLYVAREMTCVAKTGTRTERLEHKPSSRDSFSAPQEYRMESETDKSNKNSKQSLPSSSSMTDCSTSSGETFKSIKSQSANESNKTVVVKASYKNDTI
RFKLLPSMKYEQLLEEIAKRLKLSIGLFQLKYKDDEGDWVILASDADLQECLEILDTTRLRILKLQVQDVVCPIGSSSGSCSMLRP

GO Analysis
1
GO Category Biological Process
GO Term biosynthetic process
2
GO Category Biological Process
GO Term nucleobase, nucleoside, nucleotide and nucleic acid metabolic process
3
GO Category Molecular Function
GO Term sequence-specific DNA binding transcription factor activity
Presence of Splice variants YES