LOC_Os11g14430

Expression Profile

RGAP LOCUS ID LOC_Os11g14430
RAP-DB ID Os11g0250000
Function APOBEC1 complementation factor, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization Nuclear
score 12

2) CELLO Prediction
localization Nuclear
score 2.453

3) NUCPRED Prediction
localization Non Nuclear
score 0.33

4) Y-Loc Prediction
localization Nuclear
score 100
confidence value 1
Number Of Software Predicting Nucleus 3
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) RBS1
Function assigned as per literature RBS1 is a negative regulator of flowering time that itself is positively regulated by SPIN1 but negatively regulated by SPL11 in rice
Subcellular localization as per literature Nucleus
Cells used for localization experiment N. benthamiana leaves
NUCLEAR or Not Nuclear NUCLEAR
PMID 24498057
Reference of localization http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0087258
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 3
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.123
NLS score 0.47
Protein Sequence >LOC_Os11g14430.2 protein
MSDRQQSEEPEEQVDLEGDDDNDVMDDDEDGYRRRRRREDSDEPDDDEEDPEVEGDGHGDAGTAAGEGGAHEMDKAAGGGGDGPEDDDEKRKWDELLALP
PQGSEVFIGGLPRDTTEEDLRELCDSFGEIYEVRLMKDKETKENKGFAFVNFTAKEAAQRAIEELHDKEHKGRTLRCSLSQAKHRLFVGNVPKGLGEEEL
RKIIQGKGPGVVNIEMFKDLHDPSRNRGFLFVEYYNHACADYARQKLSAPNFKVDGSQLTVSWAEPKGSSDSSSAAAQVKTIYVKNLPENASKEKIKEIF
EKHGEVTKVVLPPAKDGHKRDFGFVHFAERSSALKAVKGSEKYEFNGQVLEVSMAKPLGDKKPDHSFKPAGAPNFPLPPYGGYMGDPYGAYGGGGPGFNQ
PMIYGRGPAPAGMRMVPMVLPDGRLGYVLLVEFPLHHQCDAVTGGMVAAEVVKGVMAGDIALTSFSFFFPFPCAASHHAV

GO Analysis
1
GO Category Molecular Function
GO Term RNA binding
2
GO Category Molecular Function
GO Term nucleotide binding
3
GO Category Cellular comBiological Processonent
GO Term cytosol
4
GO Category Biological Process
GO Term biological_process
5
GO Category Molecular Function
GO Term nucleic acid binding
Presence of Splice variants YES