LOC_Os11g12740

Expression Profile

RGAP LOCUS ID LOC_Os11g12740
RAP-DB ID Os11g0235200
Function peptide transporter PTR2, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization plas
score 10

2) CELLO Prediction
localization PlasmaMembrane
score 4.442

3) NUCPRED Prediction
localization Non Nuclear
score 0.14

4) Y-Loc Prediction
localization Cytoplasm
score 87
confidence value 0.52
Number Of Software Predicting Nucleus 0
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) SP1
Function assigned as per literature SP1 determines rice panicle size
Subcellular localization as per literature Plasma membrane
Cells used for localization experiment Onion epidermal cells and rice root cells
NUCLEAR or Not Nuclear NOT NUCLEAR
PMID 19154200
Reference of localization https://onlinelibrary.wiley.com/doi/epdf/10.1111/j.1365-313X.2009.03799.x
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 2
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.069
NLS score -0.1
Protein Sequence >LOC_Os11g12740.1 protein
MDVESRQGPKGGDTMAASEVSVDWRGRPCGSRKHGGMKAAVFVLGIQAFEMMAIAAVGNNLITYVFNEMHYPLSKSANIVTNFIGTVFLLSLLGGFLSDS
YLGSFWTMLIFGFVELSGFILLAVQAHLPQLRPPACDMMAAAAAEGGCEEASGVKAGIFFAALYLVALGSGCLKPNIIAHGADQFRRGGGGGGDGDGDDG
GDGKRLSSYFNAAYFSFCVGELVALTVLVWVQTRSGMDVGFGVSAAAMAVGLVSLVAGVFFYRNKPPQGSIFMPIAKVFVAAVTKRKQVCPSSSSTTAAS
HAVIPATGAAPVHRINKFRFLDKACVKVQDGHGGGGDGGKESVWPPCTPAEVEQVKVLLCVVPIFACTIVFNTILAQLQTFSVQQGSAMDTRIGGGGGGA
AFHIPPASLQAIPYLVLIALVPAYEACFVPAMRRATGVDTGITPLQRIGVGLFAVTFSMVAAALVEAHRRRHAGDGLLSIFWIAPQFLVFGVSEMFTAVG
LIEFFYKQSLSGMQAFLTSMTYCSYSFGFYLSSLLVSLVNKVTSGDGAGAGGGGWLSDNDLNKDRLDLFYWLLAGLSLLNFFNYLFWSRWYSKSVETTVQ
VAGVGGEGGGGEQQEEKGVDEVNMGH

GO Analysis
1
GO Category Cellular comBiological Processonent
GO Term membrane
2
GO Category Biological Process
GO Term transport
3
GO Category Cellular comBiological Processonent
GO Term plasma membrane
4
GO Category Molecular Function
GO Term transporter activity
Presence of Splice variants No