LOC_Os11g07500
| RGAP LOCUS ID | LOC_Os11g07500 |
| RAP-DB ID | Os11g0176200 |
| Function | DSHCT domain containing protein, expressed |
Sub-cellular Localization Predictions |
|
1) WoLF-PSORT Prediction |
|
| localization | cyto |
| score | 6 |
2) CELLO Prediction |
|
| localization | Cytoplasmic |
| score | 2.204 |
3) NUCPRED Prediction |
|
| localization | Non Nuclear |
| score | 0.68 |
4) Y-Loc Prediction |
|
| localization | Nuclear |
| score | 99.91 |
| confidence value | 0.86 |
| Number Of Software Predicting Nucleus | 1 |
| Seed Specific | No |
| Transcription factor category | |
Experimental evidence for subcellular localization |
|
| Published gene name (updated 1 January 2020) | OsDSHCT |
| Function assigned as per literature | |
| Subcellular localization as per literature | NA |
| Cells used for localization experiment | |
| NUCLEAR or Not Nuclear | |
| PMID | |
| Reference of localization | |
| Is Subcellular localization evidence by author available ? | No |
Sequence Analysis |
|
| Number of PAT4 | 0 |
| Number of PAT7 | 0 |
| Number of Bipartite | 1 |
| Basic residues % | 0.119 |
| NLS score | 0.02 |
| Protein Sequence | >LOC_Os11g07500.1 protein MEEVENTSKRKAPESEHAAAVSGEHPPPPPPPDAAAKRRNLSRSCIHEVAVPKGYAAAKDEAVHGTLSSPAFHGEMAKAYPFQLDPFQSVSIACLERNES VLVSAHTSAGKTAIAEYAIAMSFRDKQRVIYTSPLKALSNQKYRELSQEFSDVGLMTGDVTLQPNATCLVMTTEILRAMLYRGSEVIKEVAWVIFDEIHY MKDRERGVVWEESIIFLPPAIKMVFLSATMSNATEFAEWICNLHKQPCHVVYTDFRPTPLQHYVFPIGGSGLYLVVDEDGQFREDNFLKLQDTFTKQSNQ VDGRKGGGPKASGRIAKGGSASGNSDIYRIVKMIMERKFQPVIIFSFSRRECEHHAMSMSKLDFNTDEEKDNIEQVFSSAILCLSEEDRGLPAIELMLPL LKRGIAVHHSGLLPLIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTSVKKWDGDTNRYIASGEYIQMSGRAGRRGKDIRGICVIMIDEKMEMSV IKDMVLGKPAPLVSTFRLSYYTILNLMSRVEGQFTAEHVIRNSFHQFQYEKALPEVVQKITSLENEATLLDSSGETDLAEYHKLGLDISELEKKIMSEMI RPERALLYLVPGRLVKVRDGSTDWGWGVVVNVVKKPPQSGTLPPALSASRGNNYIVDTLLHCSSSSNENGSRSKPLPPRPGEKGEMHVVPVPLPLLSGLS SVRINIPPDLRPPEARQNILFAVQELGKRYPQGLPKLDPIKDMGLQEPELVELVHKLDDLEQKLCSHPLHKSDQSEQQLSWYQRKAELNHEIQMLKSKMR DSQLQKFRDELRNRSRVLKMLGHIDADGVLQLKGRAACLIDTGDELLITELMFNGTFNDLDHHQVASLASCFIPCEKSSEQIRLRSELSTPMMQLQEAAR KIAEVQKECKLEVNVEEYVESTCRPYLMDVIYCWSKGATFGEVIEMTDIFEGSIIRLARRLDEFLNQLKAAAQAVGEVNLENKFGAASDSLRRGIMFANS LYL |
GO Analysis |
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| Presence of Splice variants | YES |