LOC_Os11g07490

Expression Profile

RGAP LOCUS ID LOC_Os11g07490
RAP-DB ID Os11g0176100
Function RNA recognition motif containing protein, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization Nuclear
score 6

2) CELLO Prediction
localization Nuclear
score 3.693

3) NUCPRED Prediction
localization Non Nuclear
score 0.44

4) Y-Loc Prediction
localization Nuclear
score 65.41
confidence value 0.26
Number Of Software Predicting Nucleus 3
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsCstF64
Function assigned as per literature
Subcellular localization as per literature Nucleus
Cells used for localization experiment N. benthamiana leaves
NUCLEAR or Not Nuclear NUCLEAR
PMID 19561057
Reference of localization https://academic.oup.com/pcp/article/50/8/1479/1814026
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 1
Number of Bipartite 0
Basic residues % 0.067
NLS score -0.04
Protein Sequence >LOC_Os11g07490.1 protein
MAAAAPAGAQNRCVFVGNIPYDATEEQLVQICEEVGPVVSFRLVIDKETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAENGRNADRNREK
GRGGPGMASSVDTQKQLAGTPVVGDTGLHQPVGLPSAIHAASVMAGILGGSQTANVQNGLPVQYGLGNDPLTHYLARMSKHQLYEIMSELKSLTSQNKDV
ANKLLQGIPQLSKALFQSQIMLGMVTPQMMQMAKSQQPSSSLAQSSSHISEPFPQPDAMISSVPRPSASLPNPNVLQDPSAQLHNFPQYPHSSQPAGTIF
PHGSQSGVGIHPPIVSQLLGASSSVPPLPLATSGSLISQVQPPFMPHHPRPPAMPAGMQQLPLTHPHVPQVPAIPDIAQKEMRFPEQANRSTEFAHHPKL
RKLEDGTSTPGIVNNNPAVYPAPSQGMLPGGPSGSYNSAAVSFQQPENEVPQLTPDVESALLQQVLQLTPEQLSSLPVEQQQQVIQLQKMLSAGK

GO Analysis
1
GO Category Biological Process
GO Term nucleobase, nucleoside, nucleotide and nucleic acid metabolic process
2
GO Category Biological Process
GO Term biosynthetic process
3
GO Category Molecular Function
GO Term RNA binding
4
GO Category Molecular Function
GO Term protein binding
5
GO Category Biological Process
GO Term growth
Presence of Splice variants No