LOC_Os11g07450

Expression Profile

RGAP LOCUS ID LOC_Os11g07450
RAP-DB ID Os11g0175500
Function zinc finger, C3HC4 type domain containing protein, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization Nuclear
score 14

2) CELLO Prediction
localization Extracellular
score 2.487

3) NUCPRED Prediction
localization Non Nuclear
score 0.67

4) Y-Loc Prediction
localization Nuclear
score 99.61
confidence value 0.94
Number Of Software Predicting Nucleus 2
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsSADR1
Function assigned as per literature OsSADR1 may act as a regulator in abiotic stress responses by modulating target protein levels
Subcellular localization as per literature Nucleus and cytoplasm
Cells used for localization experiment rice protoplasts
NUCLEAR or Not Nuclear NUCLEAR
PMID 29361060
Reference of localization https://academic.oup.com/pcp/article-abstract/59/3/575/4816716?redirectedFrom=fulltext
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 1
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.102
NLS score -0.16
Protein Sequence >LOC_Os11g07450.1 protein
MDAGECSSSQPCASSSPDAAGGVWAKLVPSDSAFPEVELAEDDAVVCSRVTPDGGGEVAAWCEIRRGGGDGDASSATIRNLSSDAIIVDGRVIQQEAVDI
KPGSEIVSGPQKDGHLLYTFDITGLNDQDKTNIKIVLDIENAKCSICLNLWHDVVTVAPCLHNFCNGCFSEWLRRSSANSRDKSQSAACPQCRTAVQSVG
RNHFLHNIEEAILQAFSSLQRSDEEIALLESYASVKTNIAWHAFIPFPWSYAGAMILRSTMGINICQREVLGKQKIQSRKRRLPRSNDEANHTNHADFLC
PQCGAEFGGFRCSPGAPHLPCNGCGGMMPARPDTSIPQKCLGCDRAFCGAYWCSQGVNSSQHNPICDQETFKMISQRHISSVPDTVHGGNQYEKDITERC
IQQSGKALQAIISEWIVKFDNKELDRSRLQLNHVDAITSRTYVCNQCYSKFIDFLLYWFRVSMPRNLLPPDAANRESCWYGFMCRTQHHRPDHAKKLNHV
CRPTRGNP

GO Analysis
1
GO Category Molecular Function
GO Term binding
Presence of Splice variants YES