LOC_Os11g06410

Expression Profile

RGAP LOCUS ID LOC_Os11g06410
RAP-DB ID Os11g0163500
Function homeodomain, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization Nuclear
score 6

2) CELLO Prediction
localization Nuclear
score 4.532

3) NUCPRED Prediction
localization Non Nuclear
score 0.61

4) Y-Loc Prediction
localization Nuclear
score 39.57
confidence value 0.01
Number Of Software Predicting Nucleus 3
Seed Specific No
Transcription factor category Trihelix

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) SAB18
Function assigned as per literature PD27
Subcellular localization as per literature NA
Cells used for localization experiment
NUCLEAR or Not Nuclear
PMID
Reference of localization
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.133
NLS score -0.47
Protein Sequence >LOC_Os11g06410.1 protein
MSILLWLSHVLLKLHYLRLYSCASSCTPVSILYGTNKKLKCLGDRFGEMEGSNPPGNMTQGPSYGSLDLHGISKQMHPPNSGNQGFNQPQIPGNFTIPMD
RVTEPDNISDGVQLGQHGKIAHHHHHHRHHSKNHGSDEEEHDMNEDAADGKDKKGSPWHRMKWTDSMVKLLITAVSYTGEDPGADLGGGRRNYSMMQKKG
KWKAISKVMGERGCHVSPQQCEDKFNDLNKRYKRLTDILGRGTACNVVENHSLLDHMDISEKMKEDARKILNSKHLFYEEMCSYHNNNRISLPEDPALQQ
SLQLALRCKEDNDFMRHASGDAELDDDQSEDSDYEENEEEHRAVDTNIRGPSMHKRMWHVVDHGDVGFVTSCSNDGSGRSDPYDVLDINKPFPDGCDLAL
VQKDLALKAAEIQKHRLQIETKAVQLAKQRLKWEMFRKNKDLELEKLALENEQMMLQNKRFELDLRHKELELEIKIKGNANHP

GO Analysis
1
GO Category Biological Process
GO Term biosynthetic process
2
GO Category Biological Process
GO Term nucleobase, nucleoside, nucleotide and nucleic acid metabolic process
3
GO Category Molecular Function
GO Term sequence-specific DNA binding transcription factor activity
Presence of Splice variants YES