LOC_Os11g06390

Expression Profile

RGAP LOCUS ID LOC_Os11g06390
RAP-DB ID Os11g0163100
Function actin, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization cysk
score 8

2) CELLO Prediction
localization Cytoplasmic
score 2.853

3) NUCPRED Prediction
localization Non Nuclear
score 0.02

4) Y-Loc Prediction
localization Cytoplasm
score 99
confidence value 0.99
Number Of Software Predicting Nucleus 0
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsACTIN2
Function assigned as per literature
Subcellular localization as per literature NA
Cells used for localization experiment
NUCLEAR or Not Nuclear
PMID
Reference of localization
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.096
NLS score -0.47
Protein Sequence >LOC_Os11g06390.1 protein
MADGEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAP
EEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDSLMKILTERGY
SFTTTAEREIVRDIKEKLAYVALDYEQELEAAKSSSSVEKSYELPDGQVITIGAERFRCPEVLFQPSFIGMEAPGIHETTYNSIMKCDVDIRKDLYGNIV
LSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQVNLTPTLYEVARMQVFLLSVNIILLASMLQMWISKGEYDESGPA
IVHRKCF

GO Analysis
1
GO Category Biological Process
GO Term response to endogenous stimulus
2
GO Category Biological Process
GO Term response to abiotic stimulus
3
GO Category Biological Process
GO Term anatomical structure morphogenesis
4
GO Category Biological Process
GO Term cell differentiation
5
GO Category Biological Process
GO Term multicellular organismal development
6
GO Category Biological Process
GO Term cell growth
7
GO Category Cellular comBiological Processonent
GO Term nucleolus
8
GO Category Molecular Function
GO Term protein binding
9
GO Category Cellular comBiological Processonent
GO Term cytosol
10
GO Category Cellular comBiological Processonent
GO Term mitochondrion
11
GO Category Cellular comBiological Processonent
GO Term plasma membrane
12
GO Category Cellular comBiological Processonent
GO Term cytoskeleton
13
GO Category Biological Process
GO Term response to stress
14
GO Category Cellular comBiological Processonent
GO Term cellular_component
15
GO Category Biological Process
GO Term post-embryonic development
16
GO Category Molecular Function
GO Term structural molecule activity
17
GO Category Cellular comBiological Processonent
GO Term cell wall
18
GO Category Biological Process
GO Term cellular process
19
GO Category Biological Process
GO Term cellular component organization
Presence of Splice variants YES