| RGAP LOCUS ID |
LOC_Os11g05850 |
| RAP-DB ID |
Os11g0157100 |
| Function |
cyclin-T1-3, putative, expressed |
Sub-cellular Localization
Predictions |
1) WoLF-PSORT Prediction |
| localization |
Nuclear |
| score |
11 |
2) CELLO
Prediction
|
| localization |
Nuclear |
| score |
4.402 |
3) NUCPRED
Prediction
|
| localization |
Nuclear |
| score |
0.95 |
4) Y-Loc
Prediction
|
| localization |
Nuclear |
| score |
98.86 |
| confidence value |
0.23 |
| Number Of Software Predicting Nucleus |
4 |
| Seed Specific |
No |
| Transcription factor category |
|
Experimental evidence for
subcellular localization |
| Published gene name (updated 1 January 2020) |
Cyclin-T1;3 |
| Function assigned as per literature |
regulation of grain size and yield |
| Subcellular localization as per literature |
Nucleus |
| Cells used for localization experiment |
protoplast of Arabidopsis |
| NUCLEAR or Not Nuclear |
NUCLEAR |
| PMID |
23147796 |
| Reference of localization |
https://www.nature.com/articles/cr2012151 |
| Is Subcellular localization evidence by author available ?
|
No |
Sequence Analysis
|
| Number of PAT4 |
2 |
| Number of PAT7 |
0 |
| Number of Bipartite |
1 |
| Basic residues % |
0.142 |
| NLS score |
0.81 |
| Protein Sequence |
>LOC_Os11g05850.2 protein
MLNLFASPILASVTLNGLLFQRELTSIHAYIVHLFLFPSEVSNQMLELYEQNRVAPPPSQGNDTEGSSASVVNQRASGKAPGSSEEPPTHENHLAPRQSS
TPGHQGYDHPHPEKQNSSQRVPQNDARDGTANSNEGPNMSSTMDAMKKIDKDKVKAALEKRRKSKGDVAKKVDIMDDDDLIERELEHGVELAAEDEKIKH
ERRQSWPHSAHREDHQGVARLTENTEEGELSIDSQEYRSPELDNRKRKDMHEHRNYDRGERDLKRLRS |
GO Analysis |
| 1 |
| GO Category |
Biological Process |
| GO Term |
protein modification process |
|
| 2 |
| GO Category |
Biological Process |
| GO Term |
anatomical structure morphogenesis |
|
| 3 |
| GO Category |
Biological Process |
| GO Term |
cellular component organization |
|
| 4 |
| GO Category |
Biological Process |
| GO Term |
cell differentiation |
|
| 5 |
| GO Category |
Biological Process |
| GO Term |
multicellular organismal development |
|
| 6 |
| GO Category |
Biological Process |
| GO Term |
flower development |
|
| 7 |
| GO Category |
Biological Process |
| GO Term |
biological_process |
|
| 8 |
| GO Category |
Molecular Function |
| GO Term |
kinase activity |
|
| 9 |
| GO Category |
Biological Process |
| GO Term |
cell cycle |
|
| 10 |
| GO Category |
Biological Process |
| GO Term |
response to biotic stimulus |
|
| Presence of Splice variants |
No |
