LOC_Os11g05570

Expression Profile

RGAP LOCUS ID LOC_Os11g05570
RAP-DB ID Os11g0153900
Function RNASEH2A - Putative ribonuclease H2 large subunit, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization Nuclear
score 7

2) CELLO Prediction
localization Cytoplasmic
score 2.152

3) NUCPRED Prediction
localization Non Nuclear
score 0.22

4) Y-Loc Prediction
localization Cytoplasm
score 80
confidence value 0.65
Number Of Software Predicting Nucleus 1
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) LS1
Function assigned as per literature LS1 plays roles in maintaining genome stability and leaf structure from high light and high temperature (HLHT) stress damage in rice
Subcellular localization as per literature Nucleus
Cells used for localization experiment Rice protoplasts and Nicotiana benthamiana leaves
NUCLEAR or Not Nuclear NUCLEAR
PMID 30449034
Reference of localization https://nph.onlinelibrary.wiley.com/doi/abs/10.1111/nph.15597
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 0
Number of Bipartite 1
Basic residues % 0.141
NLS score 0.02
Protein Sequence >LOC_Os11g05570.1 protein
MVAAVAPEWATKEPCLMGIDEAGRGPVLGPMVYGCMYCARSYQDTLATLKFADSKTLKEEQREELFESLKDNSSIGWEVDVICPKELSAKMLKRSKVNLN
EISHNSAMGLVKRALDMGVLLAEVYIDTVGDAEKYRIKLTEKFPGIKFVVAKKADSLFPVVSGASIVSKVTRDRALRNWVFDETAQNMHMNTGSGYPGDP
STKQWLEDHKHPIFGFPSLVRFSWGTCTPFFNDAIEVTWESNELEEDAGSNGSVKRQVKLSSLGFTGFKRKSEEIDSSGKGRCKFFQARKLELVRKFQ

GO Analysis
1
GO Category Biological Process
GO Term nucleobase, nucleoside, nucleotide and nucleic acid metabolic process
2
GO Category Molecular Function
GO Term RNA binding
3
GO Category Biological Process
GO Term metabolic process
4
GO Category Molecular Function
GO Term nuclease activity
5
GO Category Molecular Function
GO Term catalytic activity
6
GO Category Molecular Function
GO Term nucleic acid binding
Presence of Splice variants No