LOC_Os11g04954

Expression Profile

RGAP LOCUS ID LOC_Os11g04954
RAP-DB ID Os11g0146800
Function DNA repair protein Rad51, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization cyto
score 11

2) CELLO Prediction
localization Cytoplasmic
score 3.02

3) NUCPRED Prediction
localization Non Nuclear
score 0.2

4) Y-Loc Prediction
localization Nuclear
score 99.9
confidence value 0.98
Number Of Software Predicting Nucleus 1
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsDMC1|DMC1B
Function assigned as per literature DMC1 plays a role in meiosis in rice
Subcellular localization as per literature Chromosomes
Cells used for localization experiment Meiocytes
NUCLEAR or Not Nuclear NUCLEAR
PMID 26960731
Reference of localization http://www.plantphysiol.org/content/early/2016/03/09/pp.16.00167
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.113
NLS score -0.47
Protein Sequence >LOC_Os11g04954.1 protein
MAPSKQYDEGGQLQLMDAERIEEEEECFESIDKLISQGINSGDVKKLQDAGIYTCNGLMMHTKKSLTGIKGLSEAKVDKICEAAEKLLSQGFMTGSDLLI
KRKSVVRITTGSQALDELLGGGIETLCITEAFGEFRSGKTQLAHTLCVSTQLPIHMHGGNGKVAYIDTEGTFRPERIVPIAERFGMDANAVLDNIIYARA
YTYEHQYNLLLGLAAKMAEEPFRLLIVDSVIALFRVDFSGRGELAERQQKLAQMLSRLTKIAEEFNVAVYITNQVIADPGGGMFITDPKKPAGGHVLAHA
ATIRLMLRKGKGEQRVCKIFDAPNLPEGEAVFQVTSGGIMDAKD

GO Analysis
1
GO Category Molecular Function
GO Term DNA binding
2
GO Category Biological Process
GO Term metabolic process
3
GO Category Biological Process
GO Term response to stress
4
GO Category Biological Process
GO Term DNA metabolic process
5
GO Category Molecular Function
GO Term nucleotide binding
6
GO Category Biological Process
GO Term cell cycle
7
GO Category Molecular Function
GO Term protein binding
8
GO Category Molecular Function
GO Term hydrolase activity
9
GO Category Biological Process
GO Term catabolic process
10
GO Category Biological Process
GO Term nucleobase, nucleoside, nucleotide and nucleic acid metabolic process
11
GO Category Biological Process
GO Term cellular component organization
Presence of Splice variants No