LOC_Os11g04600

Expression Profile

RGAP LOCUS ID LOC_Os11g04600
RAP-DB ID Os11g0141900
Function BTBA5 - Bric-a-Brac,Tramtrack, Broad Complex BTB domain with Ankyrin repeat region, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization chlo
score 3

2) CELLO Prediction
localization Cytoplasmic
score 1.552

3) NUCPRED Prediction
localization Non Nuclear
score 0.06

4) Y-Loc Prediction
localization Chloroplast
score 8
confidence value 0.31
Number Of Software Predicting Nucleus 0
Seed Specific No
Transcription factor category TRAF

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsBOP2
Function assigned as per literature
Subcellular localization as per literature NA
Cells used for localization experiment
NUCLEAR or Not Nuclear
PMID
Reference of localization
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.089
NLS score -0.47
Protein Sequence >LOC_Os11g04600.1 protein
MSSEDSLKSLSLDYLSLLINGQAFSDVAFSVEGRLVHAHRCVLAARSLFFRKLFCGLDPNHQPPPPPPPLNWPMAGGGGGGSGGGGRGGAGGGGGAPATP
ELVIPVSSIRYEVLVLVLQFLYSGQASVAAPKSGPLPGCGARGCWHTRCGAAVDLALDTLAAARSFGVEQLALLVQKQLESMVKEASVDDVMKVLMASRK
FEMQELWATCSHLVARSGLSADLLAKHLPIDVVAKIEEIRAKSPLAAVAAPRSPFLTHHYLPMNPASSAADRDNKIRRMRRALDAADIELVKLMVMGEGL
DLDDALAVHYAVQHCNRDVVKALLELGAADVNSRAGPTGKTALHLAAEMVSPDMVSVLLDHHADPNSRTLDGVTPLDVLRSLTSEFLFKGAVPGLTHIEP
NKLRLCLELVQSAVMVTTRDDGAPVTGGAEAGGSDGGNFPRSDADDSLVSLTMNSTLMYQGQEMAAAVAAGEGRKSNNGRGSPPPAMYFPNGFA

GO Analysis
1
GO Category Cellular comBiological Processonent
GO Term nucleus
2
GO Category Biological Process
GO Term flower development
3
GO Category Cellular comBiological Processonent
GO Term cytoplasm
4
GO Category Biological Process
GO Term abscission
5
GO Category Biological Process
GO Term anatomical structure morphogenesis
6
GO Category Biological Process
GO Term multicellular organismal development
7
GO Category Molecular Function
GO Term protein binding
Presence of Splice variants No