LOC_Os11g04030

Expression Profile

RGAP LOCUS ID LOC_Os11g04030
RAP-DB ID Os11g0135000
Function major facilitator superfamily antiporter, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization plas
score 7

2) CELLO Prediction
localization PlasmaMembrane
score 4.96

3) NUCPRED Prediction
localization Non Nuclear
score 0.15

4) Y-Loc Prediction
localization Cytoplasm
score 70
confidence value 0.64
Number Of Software Predicting Nucleus 0
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) TOM2
Function assigned as per literature TOM2 is involved in the internal transport of DMA, which is required for normal plant growth
Subcellular localization as per literature Cell Membrane
Cells used for localization experiment onion epidermal and rice root cells
NUCLEAR or Not Nuclear NOT NUCLEAR
PMID 26432636
Reference of localization http://www.jbc.org/content/early/2015/10/02/jbc.M114.635193
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.081
NLS score -0.47
Protein Sequence >LOC_Os11g04030.1 protein
MAEPPATKVYHDGCPGCAMEQRKEEHKGIPYKEFLFVAITTLASSLPISSLFPFLYFMIRELHISRTEEDIGFYAGFLGASYMIGRGFASILWGMVADRI
GRKPVIIFSIFAVIVLNTLFGLSVKYWMAVTTRFLLGALNGLLAPIKAYSIEVCRAEHQALGLSIVSTAWGIGLVVGPAIGGYLAQPVKQYPHLFHEKSI
FGRFPYLLPCLCISLFALLVLISCIWLPETLHKHKGLETGVEAAEASTTQGSAESHKKSLFRNWPLMSSIITYCVFSLHDTAYSEIFSLWTVSDRKYGGL
SFSSKDVGQVLAVAGASLLVYQLFIYRWVDKILGPINSTRIASVLSIPIIAAYPFMTHLSGIRLGVALYSAAMIKSVLAITIITGTSLLQNKAVPQGQRG
AANGIATTAMSLFKAVAPAGAGVLFSWAQKRQHAAFFPGDQMVFLLLNLTEVIGLMLTFKPFLAVPQQYK

GO Analysis
1
GO Category Biological Process
GO Term transport
2
GO Category Biological Process
GO Term response to abiotic stimulus
3
GO Category Biological Process
GO Term cellular process
4
GO Category Molecular Function
GO Term transporter activity
Presence of Splice variants YES