| RGAP LOCUS ID |
LOC_Os11g03400 |
| RAP-DB ID |
Os11g0127900 |
| Function |
ribosomal protein, putative, expressed |
Sub-cellular Localization
Predictions |
1) WoLF-PSORT Prediction |
| localization |
chlo |
| score |
7 |
2) CELLO
Prediction
|
| localization |
Cytoplasmic |
| score |
3.289 |
3) NUCPRED
Prediction
|
| localization |
Non Nuclear |
| score |
0.29 |
4) Y-Loc
Prediction
|
| localization |
Chloroplast |
| score |
6 |
| confidence value |
0.77 |
| Number Of Software Predicting Nucleus |
0 |
| Seed Specific |
No |
| Transcription factor category |
|
Experimental evidence for
subcellular localization |
| Published gene name (updated 1 January 2020) |
OsRP1 |
| Function assigned as per literature |
OsRP1 and OsCP12 interactwith OsCTR1 in the cytosol, and ubiquitination by OsCTR1 led to protein degradation via the Ub 26S proteasome |
| Subcellular localization as per literature |
OsRP1 colocalized with OsCTR1 and OsCP12 in Chloroplasts |
| Cells used for localization experiment |
Rice protoplasts |
| NUCLEAR or Not Nuclear |
NOT NUCLEAR |
| PMID |
24215658 |
| Reference of localization |
https://onlinelibrary.wiley.com/doi/full/10.1111/pce.12219 |
| Is Subcellular localization evidence by author available ?
|
No |
Sequence Analysis
|
| Number of PAT4 |
0 |
| Number of PAT7 |
0 |
| Number of Bipartite |
0 |
| Basic residues % |
0.228 |
| NLS score |
0.48 |
| Protein Sequence |
>LOC_Os11g03400.1 protein
MAAALTRPPPGTVQCFGRKKTAVAVSYCKPGRGLIKVNGVPIELIRPEMLRLKAFEPILLAGRSRFKDIDMRIRVRGGGKTSQIYAIRQAIAKALVAYYQ
KYVDEASKKEVKDIFARYDRTLLVADPRRCEPKKFGGRGARARFQKSYR |
GO Analysis |
| 1 |
| GO Category |
Cellular comBiological Processonent |
| GO Term |
membrane |
|
| 2 |
| GO Category |
Cellular comBiological Processonent |
| GO Term |
cellular_component |
|
| 3 |
| GO Category |
Cellular comBiological Processonent |
| GO Term |
cell wall |
|
| 4 |
| GO Category |
Cellular comBiological Processonent |
| GO Term |
cytosol |
|
| 5 |
| GO Category |
Biological Process |
| GO Term |
translation |
|
| 6 |
| GO Category |
Cellular comBiological Processonent |
| GO Term |
ribosome |
|
| 7 |
| GO Category |
Molecular Function |
| GO Term |
structural molecule activity |
|
| 8 |
| GO Category |
Cellular comBiological Processonent |
| GO Term |
plastid |
|
| Presence of Splice variants |
No |
