LOC_Os11g03110

Expression Profile

RGAP LOCUS ID LOC_Os11g03110
RAP-DB ID Os11g0124300
Function GRAS family transcription factor domain containing protein, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization Nuclear
score 7.5

2) CELLO Prediction
localization Nuclear
score 2.957

3) NUCPRED Prediction
localization Nuclear
score 0.85

4) Y-Loc Prediction
localization Nuclear
score 88.99
confidence value 0.05
Number Of Software Predicting Nucleus 4
Seed Specific No
Transcription factor category GRAS

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsSCR1
Function assigned as per literature OsSCR1 controls the initiation of stomatal lineage cells and the formation of subsidiary cells
Subcellular localization as per literature OsSCR1 interacted with OsSHR in nucleus
Cells used for localization experiment tobacco leaves
NUCLEAR or Not Nuclear NUCLEAR
PMID 30825332
Reference of localization https://nph.onlinelibrary.wiley.com/doi/pdf/10.1111/nph.15766
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 2
Number of PAT7 2
Number of Bipartite 0
Basic residues % 0.084
NLS score 0.78
Protein Sequence >LOC_Os11g03110.1 protein
MGSSSLLLFPSSSSSATHSSYSPSSSSHAITSLLPPLPSDHHLLLYLDHQEQHHLAAAMVRKRPASDMDLPPPRRHVTGDLSDVTAAAAPSSASAQLPAL
PTQLPAFHHTDMDLAAPAPPPPQQQVAAGEGGPPSTAWVDGIIRDIIASSGAAVSVAQLIHNVREIIRPCNPDLASILELRLRSLLTSDPAPPPPPPPSH
PALLPPDATAPPPPPTSVAALPPPPPPQPDKRRREPQCQEQEPNQPQSPKPPTAEETAAAAAAAKERKEEQRRKQRDEEGLHLLTLLLQCAESVNADNLD
EAHRALLEIAELATPFGTSTQRVAAYFAEAMSARLVSSCLGLYAPLPNPSPAAARLHGRVAAAFQVFNGISPFVKFSHFTANQAIQEAFEREERVHIIDL
DIMQGLQWPGLFHILASRPGGPPRVRLTGLGASMEALEATGKRLSDFADTLGLPFEFCPVADKAGNLDPEKLGVTRREAVAVHWLRHSLYDVTGSDSNTL
WLIQRLAPKVVTMVEQDLSHSGSFLARFVEAIHYYSALFDSLDASYSEDSPERHVVEQQLLSREIRNVLAVGGPARTGDVKFGSWREKLAQSGFRVSSLA
GSAAAQAVLLLGMFPSDGYTLIEENGALKLGWKDLCLLTASAWRPIQASGR

GO Analysis
1
GO Category Cellular comBiological Processonent
GO Term nucleus
2
GO Category Biological Process
GO Term response to abiotic stimulus
3
GO Category Biological Process
GO Term tropism
4
GO Category Biological Process
GO Term cellular process
5
GO Category Molecular Function
GO Term protein binding
6
GO Category Biological Process
GO Term biosynthetic process
7
GO Category Biological Process
GO Term nucleobase, nucleoside, nucleotide and nucleic acid metabolic process
8
GO Category Molecular Function
GO Term DNA binding
9
GO Category Biological Process
GO Term multicellular organismal development
10
GO Category Molecular Function
GO Term sequence-specific DNA binding transcription factor activity
Presence of Splice variants No