LOC_Os11g01869

Expression Profile

RGAP LOCUS ID LOC_Os11g01869
RAP-DB ID Os11g0109900
Function double-stranded RNA binding motif containing protein, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization cyto
score 7

2) CELLO Prediction
localization Nuclear
score 1.744

3) NUCPRED Prediction
localization Non Nuclear
score 0.48

4) Y-Loc Prediction
localization Nuclear
score 65.93
confidence value 0.06
Number Of Software Predicting Nucleus 2
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsDRB1-2
Function assigned as per literature OsDRB1-2 plays a role in microRNA biogenesis
Subcellular localization as per literature Nucleus
Cells used for localization experiment Nicotiana benthamiana leaves
NUCLEAR or Not Nuclear NUCLEAR
PMID 25417716
Reference of localization https://febs.onlinelibrary.wiley.com/doi/epdf/10.1111/febs.13159
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 1
Number of Bipartite 1
Basic residues % 0.116
NLS score 0.36
Protein Sequence >LOC_Os11g01869.1 protein
MDMPPTPLPPETANTSPAPNGATAGIRVENCYVFKSRLQEYAQKAGLQTPEYHTFKEGPSHEPVFKSTVVINNTSYDSLPGFFNRKAAEQSAAEVALMEI
VKSIPANANIPAVQETGLCKNLLQEYAQKMNYAIPSYICTKSASGLAPFICTVEIGGIQYIGAAARTKKDAEIKAARTALLAIQGQSEGSANGATKYIVV
PGKRVGKEVEKMPIETPKPLKIKKGGFKKKWNKRKFMKKDGQAVVEKDEARVAGDAHDSDVLMQPTVITQEASCGTLFLQPCEEAKRVEAEPPRDIEMVQ
PDKENQHSDAALVQPDDEARVEQEPSRDISVVPPNEEAISVKQEPSIDAAILQPKEEASSVKQEPFIDTAMLQACKEAGSVELGPARDTVISQLNEQDRG
VKQEPAGDTAVPQPDVDARVVKEESPRTEPNGEATNMKETPKNSAVCNSPETKEFGDITAMGSDPPATNMSEE

GO Analysis
1
GO Category Cellular comBiological Processonent
GO Term nucleoplasm
2
GO Category Biological Process
GO Term response to endogenous stimulus
3
GO Category Cellular comBiological Processonent
GO Term nucleus
4
GO Category Biological Process
GO Term regulation of gene expression, epigenetic
5
GO Category Biological Process
GO Term nucleobase, nucleoside, nucleotide and nucleic acid metabolic process
6
GO Category Molecular Function
GO Term protein binding
7
GO Category Molecular Function
GO Term RNA binding
Presence of Splice variants YES