LOC_Os10g42710

Expression Profile

RGAP LOCUS ID LOC_Os10g42710
RAP-DB ID Os10g0577800
Function RCD1, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization Nuclear
score 11

2) CELLO Prediction
localization Nuclear
score 3.193

3) NUCPRED Prediction
localization Non Nuclear
score 0.6

4) Y-Loc Prediction
localization Nuclear
score 99.69
confidence value 0.66
Number Of Software Predicting Nucleus 3
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsSRO1a|TWI1
Function assigned as per literature OsSRO1a with OsRBD1 confers enhanced stress tolerance in yeast and may play an important role under abiotic stress responses in plants
Subcellular localization as per literature Nucleus
Cells used for localization experiment Onion epidermal cells
NUCLEAR or Not Nuclear NUCLEAR
PMID 26870074
Reference of localization https://www.frontiersin.org/articles/10.3389/fpls.2016.00062/full
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 1
Number of PAT7 1
Number of Bipartite 0
Basic residues % 0.129
NLS score 0.27
Protein Sequence >LOC_Os10g42710.1 protein
MAAMNEKVLDKCGRNISSLKRKRDNPAARCADAGNTSKLHKHPADNSVVRFYVDEGHKAKIKCHFKMQIIQSYQNFMTSALPKRILLRQGGEWKDFPKQI
VKLAHSDFRTKKTITEGEHQTHLFLLDFVHMTFIDSKTGLQRPIAWIDENGKQYFPEFFIEDKTLYRKKELGNGNNVYIIVEPNGTQEMNDHFGTSESSA
ESSNFESSTDDVSSPKRAKAERSVAGNKTGGVKETIGENEPHALLPIPCRSLPQDKLGDHSRVQLAISAVQKLLLQGLGTVLGSKDIVGIYRTPAVDNHK
EFRYNLFKKQAEHTKCKRGNANVRYAWLACSKDAVDEMMLNGVMHFEKTVKCPDYGIGTILAPANCSNTCVNYSDVDENGIVHMMLCRVVMGNVEIVHHG
SKQHRPSNEYFDSGVDDIKNPQHYIVWDMNVNSHIYSEFVVTIKLPSRVKDSPATEEDCHNLSEVSSLILSSGSPDSVSQDMNLQASPALGGHYEAPMLG
DKVERAPSTPWMPFSMLFAAISTKVSAENMDMVNSCYEEFKSKKISRVDLVKKLRHIVGDRMLISTIMRLQDKLPPMSRHEAPKHVGQDDG

GO Analysis
1
GO Category Biological Process
GO Term response to stress
2
GO Category Biological Process
GO Term response to endogenous stimulus
3
GO Category Biological Process
GO Term signal transduction
4
GO Category Biological Process
GO Term response to abiotic stimulus
5
GO Category Biological Process
GO Term biological_process
6
GO Category Cellular comBiological Processonent
GO Term cytoplasm
7
GO Category Molecular Function
GO Term protein binding
8
GO Category Biological Process
GO Term anatomical structure morphogenesis
9
GO Category Biological Process
GO Term post-embryonic development
10
GO Category Cellular comBiological Processonent
GO Term nucleus
11
GO Category Biological Process
GO Term response to biotic stimulus
12
GO Category Biological Process
GO Term cell death
13
GO Category Biological Process
GO Term embryo development
14
GO Category Biological Process
GO Term metabolic process
15
GO Category Biological Process
GO Term cellular process
16
GO Category Biological Process
GO Term biosynthetic process
Presence of Splice variants YES