LOC_Os10g42690

Expression Profile

RGAP LOCUS ID LOC_Os10g42690
RAP-DB ID Os10g0577600
Function jmjC domain containing protein, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization Nuclear
score 14

2) CELLO Prediction
localization Nuclear
score 3.532

3) NUCPRED Prediction
localization Nuclear
score 0.87

4) Y-Loc Prediction
localization Nuclear
score 96.59
confidence value 0.48
Number Of Software Predicting Nucleus 4
Seed Specific No
Transcription factor category Jumonji

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) JMJ706|OsJMJ706
Function assigned as per literature rice JMJ706 encodes a heterochromatin-associated H3K9 demethylase involved in the regulation of flower development in rice.
Subcellular localization as per literature Nucleus
Cells used for localization experiment onion cells
NUCLEAR or Not Nuclear NUCLEAR
PMID 18765808
Reference of localization https://www.pnas.org/content/105/36/13679.long
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 2
Number of PAT7 2
Number of Bipartite 0
Basic residues % 0.128
NLS score 0.87
Protein Sequence >LOC_Os10g42690.1 protein
MQQVEGRNCLPAEVRIGLETLKRRRLERMRLTAQNNAGDGPPVPARSGGDALRTPANCGVRLHANNGTALPSRTTQNKDPFAKRRVDKFDMSSLEWIDKI
EECPVYYPTKEEFEDPIGYIQKIAPVASKYGICKIVSPVSASVPAGVVLMKEQPGFKFMTRVQPLRLAKWAEDDTVTFFMSERKYTFRDYEKMANKVFAK
KYSSASCLPAKYVEEEFWREIAFGKMDFVEYACDVDGSAFSSSPHDQLGKSNWNLKNFSRLSNSVLRLLQTPIPGVTDPMLYIGMLFSMFAWHVEDHYLY
SINYHHCGAFKTWYGIPGDAAPGFEKVASQFVYNKDILVGEGEDAAFDVLLGKTTMFPPNVLLDHNVPVYKAVQKPGEFVITFPRSYHAGFSHGFNCGEA
VNFAISDWFPLGSVASRRYALLNRTPLLAHEELLCRSAVLLSHKLLNSDPKSLNKSEHPHSQRCLKSCFVQLMRFQRNTRGLLAKMGSQIHYKPKTYPNL
SCSMCRRDCYITHVLCGCNFDPVCLHHEQELRSCPCKSNQVVYVREDIQELEALSRKFEKDICLDKEISGFDSYKQAEKNEPFFEITRNLRNTEVNLIED
AFSGATAADAAKSSPATSTLTSFAQHDVPVLAEAIVCANQADQLYSTTEQTISSPLVKGTDAVGANSSSMADANNGTGSCNASAVEYSGNSDSESEIFRV
KRRSGVSVKPASDAKTSNLSDQQVLRRLKKVRPEIQQHNKRPEDYGHCSVPSGRMSMKNLNSSSSCGEEHWRMKRRQLETQQDESSYSAKQKSYSYPSTS
YSFRGEFVEMSRDAAAEVRPKRLKIRLPSSSTNRVVEQGSSGQRFTRDDKSLGCWPAI

GO Analysis
1
GO Category Biological Process
GO Term biological_process
2
GO Category Biological Process
GO Term biosynthetic process
3
GO Category Biological Process
GO Term nucleobase, nucleoside, nucleotide and nucleic acid metabolic process
4
GO Category Molecular Function
GO Term sequence-specific DNA binding transcription factor activity
Presence of Splice variants No