LOC_Os10g42430

Expression Profile

RGAP LOCUS ID LOC_Os10g42430
RAP-DB ID Os10g0575000
Function transcription factor MYC7E, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization Nuclear
score 12

2) CELLO Prediction
localization Nuclear
score 3.671

3) NUCPRED Prediction
localization Nuclear
score 0.91

4) Y-Loc Prediction
localization Nuclear
score 99.88
confidence value 0.64
Number Of Software Predicting Nucleus 4
Seed Specific No
Transcription factor category bHLH

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsMYC2
Function assigned as per literature Role in the inductive production of sakuranetin during defence responses in rice
Subcellular localization as per literature OsMYC2 was localized with OsMYL1, OsMYL2 in the nucleus
Cells used for localization experiment onion epidermal cells
NUCLEAR or Not Nuclear NUCLEAR
PMID 28067270
Reference of localization https://www.nature.com/articles/srep40175
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 4
Number of PAT7 1
Number of Bipartite 0
Basic residues % 0.093
NLS score 0.9
Protein Sequence >LOC_Os10g42430.1 protein
MWVLLSPLLTTKNPFHPIPIPTFPLLLFSSSLVGVLFQIKSNLEEEEIEIKSMNLWTDDNASMMEAFMASADLPAFPWGAASTPPPPPPPPHHHHQQQQQ
QVLPPPAAAPAAAAFNQDTLQQRLQSIIEGSRETWTYAIFWQSSIDVSTGASLLGWGDGYYKGCDDDKRKQRSSTPAAAAEQEHRKRVLRELNSLIAGAG
AAPDEAVEEEVTDTEWFFLVSMTQSFPNGLGLPGQALFAAQPTWIATGLSSAPCDRARQAYTFGLRTMVCLPLATGVLELGSTDVIFQTGDSIPRIRALF
NLSAAAASSWPPHPDAASADPSVLWLADAPPMDMKDSISAADISVSKPPPPPPHQIQHFENGSTSTLTENPSPSVHAPTPSQPAAPPQRQQQQQQSSQAQ
QGPFRRELNFSDFASNGGAAAPPFFKPETGEILNFGNDSSSGRRNPSPAPPAATASLTTAPGSLFSQHTPTLTAAANDAKSNNQKRSMEATSRASNTNNH
PAATANEGMLSFSSAPTTRPSTGTGAPAKSESDHSDLEASVREVESSRVVAPPPEAEKRPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRAVVP
NVSKMDKASLLGDAISYINELRGKLTALETDKETLQSQMESLKKERDARPPAPSGGGGDGGARCHAVEIEAKILGLEAMIRVQCHKRNHPAARLMTALRE
LDLDVYHASVSVVKDLMIQQVAVKMASRVYSQDQLNAALYTRIAEPGTAAR

GO Analysis
1
GO Category Molecular Function
GO Term DNA binding
2
GO Category Biological Process
GO Term biosynthetic process
3
GO Category Biological Process
GO Term nucleobase, nucleoside, nucleotide and nucleic acid metabolic process
4
GO Category Biological Process
GO Term carbohydrate metabolic process
5
GO Category Biological Process
GO Term cellular process
6
GO Category Biological Process
GO Term secondary metabolic process
7
GO Category Biological Process
GO Term response to stress
8
GO Category Biological Process
GO Term biological_process
9
GO Category Molecular Function
GO Term protein binding
10
GO Category Molecular Function
GO Term sequence-specific DNA binding transcription factor activity
11
GO Category Biological Process
GO Term response to abiotic stimulus
12
GO Category Cellular comBiological Processonent
GO Term nucleus
13
GO Category Biological Process
GO Term response to endogenous stimulus
14
GO Category Biological Process
GO Term response to biotic stimulus
15
GO Category Biological Process
GO Term multicellular organismal development
16
GO Category Biological Process
GO Term signal transduction
17
GO Category Biological Process
GO Term metabolic process
Presence of Splice variants No