LOC_Os10g42320

Expression Profile

RGAP LOCUS ID LOC_Os10g42320
RAP-DB ID Os10g0573900
Function nonsense-mediated mRNA decay protein 3, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization chlo
score 7

2) CELLO Prediction
localization Nuclear
score 2.333

3) NUCPRED Prediction
localization Non Nuclear
score 0.37

4) Y-Loc Prediction
localization Chloroplast
score 7
confidence value 0.16
Number Of Software Predicting Nucleus 1
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsNMD3
Function assigned as per literature OsNMD3 is important for ribosome assembly and the maintenance of normal protein synthesis efficiency
Subcellular localization as per literature Nucleus and cytoplasm
Cells used for localization experiment rice protoplast
NUCLEAR or Not Nuclear NUCLEAR
PMID 24723395
Reference of localization https://academic.oup.com/jxb/article/65/12/3055/613591
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 1
Number of PAT7 2
Number of Bipartite 1
Basic residues % 0.119
NLS score 0.96
Protein Sequence >LOC_Os10g42320.1 protein
MLPGSAAPAAGSGMFVPTQTVGTVLCCICGVAMQPNPANMCARCIRARVDITEGVPRHAAVVYCPDCTSYLQPPRSWLRAGPESPELMQILLRRLNRPLA
RLRVSLSAAEFVFSEPHSKRLRLKLRLRREVFNAVVLEQTHPVEFTVHDRLCDACARAQSNPDQWVAVVQLRQHVPHRRTFLYLEQLLLKHGQASLALRV
AAAPGGLDFFFGSRSHAARLVDFLATVAPVQTQTAKQLVSHDTKSNVYNYKHTFSVEICPICREDLIALSPQVSRDLGGLGPIVLCIKVTNAIALLDPLT
LRVHHLEEKKYRVYNFKAALTSKQLVEYIVLDIEHESPEITIDGSRYQLAYAQVARVSDFGKNDTMFTVRTHLGHLLNPGDLALGYDLYGANLNDDDMDT
AMMRHSLPEVILVKKSFAKRPRTRRWKLKRLPMEEDAVNKAKGELEKRADEYEEFLRDLEHNSDIRFQIDLYKDEDYRSEMASTIGDDVPTVPIEELIED
LSLGDDEEEDEGGEGNQHAVMVG

GO Analysis
1
GO Category Molecular Function
GO Term molecular_function
2
GO Category Cellular comBiological Processonent
GO Term cytosol
3
GO Category Biological Process
GO Term nucleobase, nucleoside, nucleotide and nucleic acid metabolic process
4
GO Category Biological Process
GO Term catabolic process
Presence of Splice variants No