| RGAP LOCUS ID |
LOC_Os10g42280 |
| RAP-DB ID |
Os10g0573400 |
| Function |
cyclase/dehydrase family protein, putative, expressed |
Sub-cellular Localization
Predictions |
1) WoLF-PSORT Prediction |
| localization |
cyto |
| score |
7 |
2) CELLO
Prediction
|
| localization |
Nuclear |
| score |
1.961 |
3) NUCPRED
Prediction
|
| localization |
Non Nuclear |
| score |
0.17 |
4) Y-Loc
Prediction
|
| localization |
Cytoplasm |
| score |
60 |
| confidence value |
0.47 |
| Number Of Software Predicting Nucleus |
1 |
| Seed Specific |
No |
| Transcription factor category |
|
Experimental evidence for
subcellular localization |
| Published gene name (updated 1 January 2020) |
OsPYL1 |
| Function assigned as per literature |
OsPYL1 plays a role in rice ABA signaling pathway |
| Subcellular localization as per literature |
Cytosol |
| Cells used for localization experiment |
Nicotiana benthamiana cells |
| NUCLEAR or Not Nuclear |
NOT NUCLEAR |
| PMID |
26491145 |
| Reference of localization |
https://academic.oup.com/pcp/article/56/12/2396/2755915 |
| Is Subcellular localization evidence by author available ?
|
No |
Sequence Analysis
|
| Number of PAT4 |
0 |
| Number of PAT7 |
0 |
| Number of Bipartite |
0 |
| Basic residues % |
0.094 |
| NLS score |
-0.47 |
| Protein Sequence |
>LOC_Os10g42280.1 protein
MEQQEEVPPPPAGLGLTAEEYAQVRATVEAHHRYAVGPGQCSSLLAQRIHAPPAAVWAVVRRFDCPQVYKHFIRSCVLRPDPHHDDNGNDLRPGRLREVS
VISGLPASTSTERLDLLDDAHRVFGFTITGGEHRLRNYRSVTTVSQLDEICTLVLESYIVDVPDGNTEDDTRLFADTVIRLNLQKLKSVSEANANAAAAA
AAPPPPPPAAAE |
GO Analysis |
| 1 |
| GO Category |
Biological Process |
| GO Term |
metabolic process |
|
| 2 |
| GO Category |
Biological Process |
| GO Term |
cellular process |
|
| 3 |
| GO Category |
Molecular Function |
| GO Term |
lipid binding |
|
| 4 |
| GO Category |
Biological Process |
| GO Term |
response to endogenous stimulus |
|
| 5 |
| GO Category |
Biological Process |
| GO Term |
signal transduction |
|
| 6 |
| GO Category |
Molecular Function |
| GO Term |
protein binding |
|
| 7 |
| GO Category |
Molecular Function |
| GO Term |
receptor activity |
|
| Presence of Splice variants |
No |
