LOC_Os10g41780

Expression Profile

RGAP LOCUS ID LOC_Os10g41780
RAP-DB ID Os10g0567400
Function chlorophyllide a oxygenase, chloroplast precursor, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization chlo
score 11

2) CELLO Prediction
localization Mitochondrial
score 1.171

3) NUCPRED Prediction
localization Non Nuclear
score 0.17

4) Y-Loc Prediction
localization Chloroplast
score 9
confidence value 0.2
Number Of Software Predicting Nucleus 0
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsCAO1|PGL
Function assigned as per literature PGL plays important roles in Chl b and Chl a syntheses, Chl degradation, and leaf senescence in rice
Subcellular localization as per literature Chloroplast
Cells used for localization experiment Nicotiana benthamiana epidermal leaf cells
NUCLEAR or Not Nuclear NOT NUCLEAR
PMID 26709310
Reference of localization https://academic.oup.com/jxb/article/67/5/1297/2885049
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.113
NLS score -0.47
Protein Sequence >LOC_Os10g41780.1 protein
MTTVASLSLLPHLLIKPSFRCCSRKGVGRYGGIKVYAVLGDDGADYAKNNAWEALFHVDDPGPRVPIAKGKFLDVNQALEVVRFDIQYCDWRARQDLLTI
MVLHNKVVEVLNPLAREFKSIGTLRKELAELQEELAKAHNQVHLSETRVSSALDKLAQMETLVNDRLLQDGGSSASTAECTSLAPSTSSASRVVNKKPPR
RSLNVSGPVQPYNPSLKNFWYPVAFSSDLKDDTMVPIDCFEEQWVIFRGKDGRPGCVMNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDGKCEKMPSTK
MLNVRIRSLPCFEQEGMVWIWPGNDPPKSTIPSLLPPSGFTIHAEIVMELPVEHGLLLDNLLDLAHAPFTHTSTFAKGWSVPSLVKFLTPSSGLQGYWDP
YPIDMEFRPPCMVLSTIGISKPGKLEGKSTKQCSTHLHQLHICLPSSRNKTRLLYRMSLDFAPWIKHVPFMHILWSHFAEKVLNEDLRLVLGQQERMING
ANVWNWPVSYDKLGIRYRLWRDAIERGVDRLPFSNQSESGS

GO Analysis
1
GO Category Molecular Function
GO Term catalytic activity
2
GO Category Biological Process
GO Term metabolic process
3
GO Category Cellular comBiological Processonent
GO Term membrane
4
GO Category Cellular comBiological Processonent
GO Term thylakoid
5
GO Category Cellular comBiological Processonent
GO Term plastid
6
GO Category Biological Process
GO Term biosynthetic process
7
GO Category Biological Process
GO Term cellular process
Presence of Splice variants YES