LOC_Os10g41590

Expression Profile

RGAP LOCUS ID LOC_Os10g41590
RAP-DB ID Os10g0565600
Function zinc finger, C3HC4 type domain containing protein, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization Nuclear
score 8

2) CELLO Prediction
localization Nuclear
score 1.168

3) NUCPRED Prediction
localization Non Nuclear
score 0.65

4) Y-Loc Prediction
localization Nuclear
score 99.58
confidence value 0.94
Number Of Software Predicting Nucleus 3
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsHUB2|FRRP1
Function assigned as per literature OsHUB2 is Involved in Late Anther Development
Subcellular localization as per literature Nucleus when interacted with OsHUB1 and itself
Cells used for localization experiment Nicotiana benthamiana leaf
NUCLEAR or Not Nuclear NUCLEAR
PMID 26143250
Reference of localization http://www.plantphysiol.org/content/168/4/1389.long
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 1
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.136
NLS score -0.29
Protein Sequence >LOC_Os10g41590.1 protein
MDAAALQYENQKLVQQLEAQKSKMRALEGKFKELRDEQCSYDNTLICLNKMWNQLIDDLVLLGVRAGGDLNGLQALDHEEMSEESLESCPSEEIFLFRLL
NSRNFRNNDDSSLSKLVEEALALRYSTTVTLMKSLQEAFAVQQARSESLSLALNGQNSSEDVIVALENHNDYLKEVVDNLRQAVSIINRKHEKYLDEIEA
FKNNQSRELHEVKCLSGELEESMAELEESRRKLAVLQLQTGGGSLMNTSAPNGVNGSVSTDKSSDKGMGWRDLKDAVEEAKTLAANRLFELHETQEDNLI
LSKQLEDIQDQLKDENYIVTSKPYTILSDQLHHLNAEIERYRGLVEVLQNEKDQLMQKEEEMLAKAESVDAVQQSITTYKAKIEDLEHEIQKLMAEKNDL
EIKAEEALQDSGKKDFKDEIHVMAASLSKEMELLDNQMNRSKDAASEALALREEADYLRTLLAKKIDEQKEISDRYNTQVTEIKSLKALIETLDQEKQEL
QFIVDMLGKECSESRAISEIEESENRARKQAEYLRKCLEEHNLELRVKAANEAETACQQRLSIAEAELEDLRAKVDASERDVMKLKESIRIKEAEVDGHI
SEIETIGQAYEDMQTQNQHLLQQVADRDDFNIKLVSDSVKMKQAYGSLLAEKNMLQKQLQHVNSSLESSKLKITSGEEQMKTYVAQAMKSSSENRHLAIS
LERTMLEVSDAEKELKWLRSATGSAEKEYEINQKKIAELKMELERERNERIKLEEEYEEVKNEVSELTSETEETTIQKLQDEIKECKAILKCGVCFDRPK
EVVITKCFHLFCSPCIQRNLEIRHRKCPGCGTPFGQSDVREVKI

GO Analysis
1
GO Category Biological Process
GO Term cellular component organization
2
GO Category Biological Process
GO Term protein modification process
3
GO Category Cellular comBiological Processonent
GO Term nucleus
4
GO Category Molecular Function
GO Term protein binding
5
GO Category Biological Process
GO Term anatomical structure morphogenesis
6
GO Category Biological Process
GO Term multicellular organismal development
7
GO Category Biological Process
GO Term reproduction
8
GO Category Biological Process
GO Term post-embryonic development
Presence of Splice variants YES