LOC_Os10g40780
| RGAP LOCUS ID | LOC_Os10g40780 | ||||
| RAP-DB ID | Os10g0556700 | ||||
| Function | CCR4-Not complex component, Not1domain containing protein, expressed | ||||
Sub-cellular Localization Predictions |
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1) WoLF-PSORT Prediction |
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| localization | Nuclear | ||||
| score | 5 | ||||
2) CELLO Prediction |
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| localization | Nuclear | ||||
| score | 1.863 | ||||
3) NUCPRED Prediction |
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| localization | Non Nuclear | ||||
| score | 0.56 | ||||
4) Y-Loc Prediction |
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| localization | Nuclear | ||||
| score | 83.67 | ||||
| confidence value | 0.18 | ||||
| Number Of Software Predicting Nucleus | 3 | ||||
| Seed Specific | No | ||||
| Transcription factor category | |||||
Experimental evidence for subcellular localization |
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| Published gene name (updated 1 January 2020) | OsNOT1 | ||||
| Function assigned as per literature | |||||
| Subcellular localization as per literature | NA | ||||
| Cells used for localization experiment | |||||
| NUCLEAR or Not Nuclear | |||||
| PMID | |||||
| Reference of localization | |||||
| Is Subcellular localization evidence by author available ? | No | ||||
Sequence Analysis |
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| Number of PAT4 | 0 | ||||
| Number of PAT7 | 0 | ||||
| Number of Bipartite | 0 | ||||
| Basic residues % | 0.088 | ||||
| NLS score | -0.47 | ||||
| Protein Sequence | >LOC_Os10g40780.1 protein MIPFNSAVAEDVRSLVQGVDDSTFDSTHRELCQLADCSPDGCSLLLQVCLDEVLLNADVAKSSRLKPELLSTVFKYCLDKPYFSTSFCEALKTVHVSDMF LVKLSNELNLSAGERVGVGLALSDSGNLGLITKGQKFSIAEIEEICANPAHVLTNDQIHDIVVFLHQTDGLSKHMDSFTNIISLLNVKEMPFYVPAPIKE GNARPTISSRHMELYTGSLDDDFDSLLSEIGKEISMADIITELGYGCTSDIAHCKEILSLFEPLDDMGISKLLGAVVCTHVGLGEAHNTYSTFMSAVGNS QPSDSSQFTAWNIDVLVDSINEIAPRTNWITVVENLDHEGFCIPDEAAFCLLMSIYSRACKDPFPLHAVCGSLWKNTEGQLSFLKHAVAAPTDTFTFKHC SRKMVFPEFANRMQGNQAWYCLDLLEVLCQLAELGYATMVRSMLDYPLIHCPDVLLLGVSHINTPYNLLQYEVLSCVFPMILKDTTYSSLMNSLWHVNPY LTLRGFVDSHSDANCLLRTVEICQDLTILSAVLDSTPFAFSIKLATVAFRQSHSNLEKWLVEKLTAQGETFLEEIMSNTTYEAAEGAVQQPQVMILDICR ESCPLIIKVLQSHSGQLLSNQLVEELRRVEAVHESRNHGVVGRDAPTSEGGPDDIEAQANIYFHQMFSGQISVDAMVQMLARFKESTNKRELSIFNCMVS NLFEEYKFFPKYPDTQLKLAAVLMGSLIKHQLVAHLGLGIALRSVLDALRKSIDSKMFMFGTTALEQFMDRLIEWPQYCNHILQISHLRATHAELVAAIE RVLAKISSSQNEPNVGSMLSADQHGSSSIGNMEASEASWQLINPTPTQLERSHQQRHQGFLGERSKGSTNIIQAKNILSSGQMPLASSPGDLAVNLKAAT TPSSQASPHHSTTVSAPLQPTGFLRSRSSAPSGIRQPSFTTGFGAALNIETLVAAAERRDTPIEAPPSEVQDKIFFMINNISTSNMEAKAREFNEVLQEQ YYPWFAQYMVMKRASIEPNFHDLYLKFFDKVNSKSLNKEMVKATYENCKVLLQSDLIKSSSEERSLLKNLGSWLGKFTIGRNQTLRAKEIDPKILIIEAY ERGLMIAIIPFTSKILEPCQSSIAYRPPNPWTMGILSLLVEIYNLPNLKMNLKFDIEVLFKNLSVDMKDVKPSSLLKDRIRQIEGNPDFSNKDVSASQAP VVAEVSSGVMPTINHVEPQPEINSTSRATSLPNMLSQYAAPLRLPTNNMVEDDKSALIMPEQVSSLGLSQVSPSQTPSLSSSSFSLSQLIAAIPRADIYF RINEKLSSFGSLQYSKIMDMALDKAIKEIIGPVIQRSVTIASRTTKELILKDYAMEADDSAVSRSAHLMVGTLAGSLAHVTSKEPLRVALSSHLRSLIQG ITNNTESTEQIMLILVNDNLDLGCALIETVATRKAVEMIDGEIKQPFSQLRRQKELLGSAYYDAFPYTQGLKRVPDALRPKPTGHLSAAQRRVYEDFITV WHSQSSQNAGGSATATAMAVAPSNSSVPRVYSPNSALTDSSSFSSHFASASQTTELVHEESDRNAHLSSLSSKIGASDTSTQVIGTTNVASVFPPMVPND LPVGEPTTTNKDLVTSAPLSPTTAVDRMGSVFVEPLNTSDALEMYQQVSQKLDTLIAKDGKDAEIQSVIAEVPDILLRCVSRDEAALAIAQKVFRSLYDN ASNSNYVTWLLAALVAIRDVCKLVVKELTSWVIYSDEDKKFNIDIIIGLIRSELINLGDYNVHLAKIIDGGRNKAATEFAISLVQTLITQESISIAEVYN VVDALSKLAIRPSSPESLQQLIEIARSFASVKDENIRQSRDKKVLSGRPLVNKEENNANDVAFTDAVGFQEKVAVSFSEWCNICDHPTMGDSAYTHYIVK LQQDGLLKGDDLTDRFYHILTELAVAHSVVSEQVVAPGGISQQPTQQLQISYFSIDSYSKLVALVVKYSSVDIGPSKGSLFNKILSVIVRIIQRDAEEKK VSFNPRPYFRLFINLLSELTTSDLHHDSANFQVLTAFANAFHVLQPLRVPAWSFAWLELVSHRSFMPKLLLCNAQKGWPFFQRLLVDLFKFMEPYLRNAE LGQPIHLLYKGTLRVLLVLLHDFPEFLCDYHFSFCDVIPPSCIQMRNVILSAFPRNMRLPDPSTPNLKIDLLAEISIPPRIMSDVDGALKSKQMKTQVDE YLKRPDGSFLTDLKQKLLLPQNEANIAGTRYNVPLVNSLVLYVGMQAVQQLQLNKMNASASAQQMNQSQLDVQIETATELFRNLVMNSDTEGRYLLLNAI ANQLRYPNNHTHYFSFIILYLFSEANQEIVQEQITRVLLERLIVNRPHPWGLLITFIELIKNPRYSFWARSFTRCAPEIEKLFESVARSCGGKGGDDGVG LPDGGH |
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GO Analysis |
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| 1 |
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| 2 |
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| Presence of Splice variants | YES | ||||