LOC_Os10g40720

Expression Profile

RGAP LOCUS ID LOC_Os10g40720
RAP-DB ID Os10g0555900
Function expansin precursor, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization chlo
score 5

2) CELLO Prediction
localization Extracellular
score 3.689

3) NUCPRED Prediction
localization Non Nuclear
score 0

4) Y-Loc Prediction
localization Secreted pathw
score
confidence value 1
Number Of Software Predicting Nucleus 0
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsEXPB3
Function assigned as per literature
Subcellular localization as per literature Cell wall
Cells used for localization experiment Rice coleoptiles and roots
NUCLEAR or Not Nuclear NOT NUCLEAR
PMID 16258250
Reference of localization http://www.molcells.org/journal/view.html?year=2005&volume=20&number=1&spage=119
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.075
NLS score -0.47
Protein Sequence >LOC_Os10g40720.1 protein
MAFSISKKAAVAALFSFLVVTCVAGARPGNFSASDFTADPNWEVARATWYGAPTGAGPDDDGGACGFKNTNQYPFSSMTSCGNEPIFKDGKGCGSCYQIR
CVNHPACSGNPETVIITDMNYYPVSKYHFDLSGTAFGAMAKPGQNDQLRHAGIIDIQFKRVPCNFPGLKVTFHVEEGSNPVYFAVLVEYEDGDGDVVQVD
LMEANSQSWTPMRESWGSIWRLDSNHRLTAPFSLRITNESGKQLVASQVIPANWAPMAVYRSFVQYSS

GO Analysis
1
GO Category Cellular comBiological Processonent
GO Term cell
2
GO Category Biological Process
GO Term cellular component organization
3
GO Category Biological Process
GO Term anatomical structure morphogenesis
4
GO Category Biological Process
GO Term cell growth
5
GO Category Biological Process
GO Term cellular process
6
GO Category Cellular comBiological Processonent
GO Term extracellular region
Presence of Splice variants No