LOC_Os10g40600

Expression Profile

RGAP LOCUS ID

LOC_Os10g40600

RAP-DB ID

Os10g0554200

Function

peptide transporter PTR2, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction

localization

plas

score

2) CELLO Prediction

localization

PlasmaMembrane

score

4.473

3) NUCPRED Prediction

localization

Non Nuclear

score

0.08

4) Y-Loc Prediction

localization

Cytoplasm

score

confidence value

0.29

Number Of Software Predicting Nucleus

Seed Specific

Transcription factor category

Experimental evidence for subcellular localization

Published gene name (updated 1 January 2020)

OsNRT1.3|NRT1.1B|OsNPF6.5

Function assigned as per literature

OsNRT1.3 shows divergence in nitrate use between rice subspecies

Subcellular localization as per literature

Plasma membrane

Cells used for localization experiment

rice protoplasts

NUCLEAR or Not Nuclear

NOT NUCLEAR

PMID

26053497

Reference of localization

https://www.nature.com/articles/ng.3337

Is Subcellular localization evidence by author available ?

Sequence Analysis

Number of PAT4

Number of PAT7

Number of Bipartite

Basic residues %

0.086

NLS score

-0.47

Protein Sequence

>LOC_Os10g40600.1 protein
MAMVLPETAAEGKALTDAWDYKGRPAGRAATGGWGCAAMILGAELFERMTTLGIAVNLVPYMTGTMHLGNAAAANTVTNFIGTSFMLCLLGGFVADTYLG
RYLTIAIFEAVQATGVMILTISTAAPGLRPPACGDPKGASAECVAADGTQLGVLYLGLYLTALGTGGLKSSVSGFGSDQFDESDVDGERKKMMRFFNWFY
FFVSLGALLAVTVLVYVQDNVGRRWGYGICAAGILAGLAVFLSGTRRYRFKKLVGSPLTQVAAVTAAAWSKRSLPLPSDPDMLYDVDDAAAAGHDVKGKQ
RMPHSKECRFLDHAAIIDRSAAESPATASKWRLCTRTDVEEVKQVVRMLPIWATTIMFWTIHAQMTTFAVAQAELMDRRLAGGFLIPAGSLTVFLIASIL
LTVPFYDRLVVPVARRATANPHGLTPLQRVFVGLSLSIAGMAVAAAVERHRATASASAAAAAPTVFLLMPQFLLVGAGEAFTYMGQLDFFLRECPKGMKT
MSTGLFLSTCAIGFFFSTLLVTIVHKVTGHGARGGGWLADNLDDGRLDYFYWLLAVISAINLVLFTVAARGYVYKEKRLADAGIELADEETIAVGH

GO Analysis

GO Category	Biological Process
GO Term	transport

GO Category	Molecular Function
GO Term	transporter activity

GO Category	Biological Process
GO Term	response to stress

GO Category	Biological Process
GO Term	response to abiotic stimulus

GO Category	Molecular Function
GO Term	protein binding

GO Category	Biological Process
GO Term	cellular process

GO Category	Biological Process
GO Term	biological_process

GO Category	Cellular comBiological Processonent
GO Term	plasma membrane

Presence of Splice variants