LOC_Os10g40490

Expression Profile

RGAP LOCUS ID LOC_Os10g40490
RAP-DB ID Os10g0552400
Function U-box domain containing protein, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization cyto
score 7

2) CELLO Prediction
localization Nuclear
score 1.877

3) NUCPRED Prediction
localization Non Nuclear
score 0.58

4) Y-Loc Prediction
localization Chloroplast
score 6
confidence value 0.17
Number Of Software Predicting Nucleus 1
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsPUB67
Function assigned as per literature OsPUB67 mediates a multilayered complex drought stress tolerance mechanism
Subcellular localization as per literature nuclei, cytoplasm, and membrane systems
Cells used for localization experiment Rice protoplasts
NUCLEAR or Not Nuclear NUCLEAR
PMID 31768809
Reference of localization https://link.springer.com/article/10.1007%2Fs11103-019-00933-8
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 1
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.123
NLS score -0.16
Protein Sequence >LOC_Os10g40490.1 protein
MAAPEKVFVALPAEAKSGRSTLSWALGHFRATAIVVTHVHVPPQMIPVMGVKFHASKLNPEQVSLFRMAERDKVDKQLDHYVNQCLRMKMKCEKLVIENE
NVVDGLVELINLHGVTKLVISAAPDRNYSRKMDKPASRTATEIMQRADPSCKIWFVCKERLICTSGVEVEIAPGHTPFIPDTGHDALQLTLHQEQDDNNE
SELGFYDEIKEACKAADNLMMRALRESYRRQKADEEVVSSLQKAKEYEELYLEEVKKRKELEEALLRASEEIAQLKQERDLPKNDQNTTMEEQKEVISDN
LILEASGQIIKPLQEYLDHDENCVREPETLLIQRKLAASFSPSSVMQSPFDEDCCIPSYFICPILQEVMREPCIASDGFTYETDAIRSWLDGGRRVSPIT
GQPIVHQQLIPNLSLRSVIQDHARRNQYSFS

GO Analysis
1
GO Category Biological Process
GO Term metabolic process
2
GO Category Biological Process
GO Term cellular process
3
GO Category Molecular Function
GO Term nucleotide binding
4
GO Category Molecular Function
GO Term kinase activity
5
GO Category Biological Process
GO Term response to stress
6
GO Category Biological Process
GO Term protein modification process
7
GO Category Molecular Function
GO Term catalytic activity
8
GO Category Cellular comBiological Processonent
GO Term intracellular
Presence of Splice variants No