LOC_Os10g39980

Expression Profile

RGAP LOCUS ID LOC_Os10g39980
RAP-DB ID Os10g0547500
Function expressed protein

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization plas
score 8

2) CELLO Prediction
localization PlasmaMembrane
score 4.899

3) NUCPRED Prediction
localization Non Nuclear
score 0.1

4) Y-Loc Prediction
localization Secreted pathw
score
confidence value 0.97
Number Of Software Predicting Nucleus 0
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) Lsi3
Function assigned as per literature Lsi3 is a plasma membrane-localized efflux transporter of silicic acid.
Subcellular localization as per literature Plasma membrane
Cells used for localization experiment Onion epidermal cells
NUCLEAR or Not Nuclear NOT NUCLEAR
PMID 26283388
Reference of localization http://www.pnas.org/content/112/36/11401.long
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 1
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.066
NLS score -0.29
Protein Sequence >LOC_Os10g39980.1 protein
MALASLPKVVMGSVAFGVFWMLAVFPSVPFLPIGRTAGALLGAVLMIVFHVISADDAYASIDLPILGLLFATMVVGGYLKNAGMFRHLGRLLAWRSQGGR
DLMCRVCVVTALASALFTNDTCCVVLTEFVLELAAERNLPAKPFLLALATSANIGSSATPIGNPQNLVIAFNSKISFISFLLGILPAMLAGMGINMLMLL
CMYWKELDGGACSPDEVAAGKQMEAIEEGRRTALNNNKKDDGDAATPASPEDDDGGDAESMMSENISTKHRWFMQCSEHRRKLFLKSFAYVVTVGMLVAY
MLGLNMSWTAITTAIALVVVDFRDAEPCLDKVSYSLLVFFSGMFVTVSGFNKTGLPGAIWNVMAPYSKINHVTGVTVLSVIILLLSNLASNVPTVLLMGD
EVAAAAATISPAAVTRSWLLLAWVSTVAGNLSLLGSAANLIVCEQARRATRNAYDLTFWNHVIFGLPSTLVVTAIGIPLIGKINI

GO Analysis
1
GO Category Biological Process
GO Term transport
2
GO Category Biological Process
GO Term cellular process
3
GO Category Molecular Function
GO Term transporter activity
4
GO Category Cellular comBiological Processonent
GO Term cell
5
GO Category Cellular comBiological Processonent
GO Term membrane
Presence of Splice variants No