LOC_Os10g39620

Expression Profile

RGAP LOCUS ID LOC_Os10g39620
RAP-DB ID Os10g0542200
Function ubiquitin family protein, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization Nuclear
score 12

2) CELLO Prediction
localization Nuclear
score 2.756

3) NUCPRED Prediction
localization Non Nuclear
score 0.49

4) Y-Loc Prediction
localization Cytoplasm
score 75
confidence value 0.42
Number Of Software Predicting Nucleus 2
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) RIF2
Function assigned as per literature RIF2 encodes ubiquitin domain-containing protein
Subcellular localization as per literature Mitochondria
Cells used for localization experiment rice protoplasts 
NUCLEAR or Not Nuclear NOT NUCLEAR
PMID 26224552
Reference of localization https://link.springer.com/article/10.1186/s12284-014-0021-6
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 1
Number of Bipartite 0
Basic residues % 0.064
NLS score -0.13
Protein Sequence >LOC_Os10g39620.1 protein
MGGGGGEAGGGDGGESSPAAAAAAAVAGAAALHIRCANGSKFTVRADLDATVGAFKEVVAGSCDVPAAQQRLIYKGRILKDEQTLESYGVETDHTIHMVR
GAGPPAGSAAPAAASPQASAAPSSGPTDGLGSLFPGLGGTGTAGTRPSGLFGSGFPELDQMQQQLSQNPNLMREIMNMPMMQNLMNNPDLIRNMIMNNPQ
MRDIIDRNPDLAHVLNDPSVLRQTLEAARNPEIMREMMRNTDRAMSNIESSPEGFNMLRRMYETVQEPFLNATTMGGEGNTAPNPFSALLGNQGSNQPRD
PATNAPNTGSESTTGTPAPNTNPLPNPWSSNAGGAQGATRAGSTGNARTGATGGLGGLGSADLSSLFGGLAGNTGTGATGGLGGLGSADLGSLLGGSPDS
SSLSQILQNPVMMQMMQNIMSDPQSMNQLLNFNPNTRNLMESNTQLREMFQNPEFIRQLTSPETMQQLLSFQQTLLSQLGQNQPRQDGSQGGNATGMRGN
VSLDTLMGMLSGLGAGGGIGVPNTSNVPPEELYATQLTQLREMGFIDTAENIQTLPITSPTPLFCKRFFSPSKFKRSVCLQSQEKIKQRNPTPTINFSIH
GRHAFVFTVLYLTIWVDVHTYEIIGSYRIEYGSTFAIVGSQSSRCMLMPSCVLGYLHKS

GO Analysis
1
GO Category Molecular Function
GO Term molecular_function
Presence of Splice variants YES