LOC_Os10g39440
| RGAP LOCUS ID | LOC_Os10g39440 | ||||
| RAP-DB ID | Os10g0539900 | ||||
| Function | transporter family protein, putative, expressed | ||||
Sub-cellular Localization Predictions |
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1) WoLF-PSORT Prediction |
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| localization | plas | ||||
| score | 7 | ||||
2) CELLO Prediction |
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| localization | PlasmaMembrane | ||||
| score | 4.69 | ||||
3) NUCPRED Prediction |
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| localization | Non Nuclear | ||||
| score | 0.02 | ||||
4) Y-Loc Prediction |
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| localization | Secreted pathw | ||||
| score | |||||
| confidence value | 0.96 | ||||
| Number Of Software Predicting Nucleus | 0 | ||||
| Seed Specific | No | ||||
| Transcription factor category | |||||
Experimental evidence for subcellular localization |
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| Published gene name (updated 1 January 2020) | OsTMT1 | ||||
| Function assigned as per literature | OsTMTs play a role in vacuolar glucose storage in rice. | ||||
| Subcellular localization as per literature | Tonoplast | ||||
| Cells used for localization experiment | Arabidopsis protoplasts | ||||
| NUCLEAR or Not Nuclear | NOT NUCLEAR | ||||
| PMID | 20202129 | ||||
| Reference of localization | https://nph.onlinelibrary.wiley.com/doi/full/10.1111/j.1469-8137.2010.03194.x | ||||
| Is Subcellular localization evidence by author available ? | No | ||||
Sequence Analysis |
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| Number of PAT4 | 0 | ||||
| Number of PAT7 | 0 | ||||
| Number of Bipartite | 0 | ||||
| Basic residues % | 0.064 | ||||
| NLS score | -0.47 | ||||
| Protein Sequence | >LOC_Os10g39440.1 protein MAGAVLVAIAASIGNLLQGWDNATIAGAVLYIKKEFNLQSEPLIEGLIVAMSLIGATIITTFSGAVADSFGRRPMLIASAVLYFVSGLVMLWAPNVYVLL LARLIDGFGIGLAVTLVPLYISETAPTDIRGLLNTLPQFSGSGGMFLSYCMVFGMSLMPQPDWRIMLGVLSIPSLIYFALTIFYLPESPRWLVSKGRMAE AKRVLQGLRGREDVSGEMALLVEGLGVGKDTKIEEYIIGPDDELADEGLAPDPEKIKLYGPEEGLSWVARPVHGQSALGSALGLISRHGSMVSQGKPLVD PVVTLFGSVHEKMPEIMGSMRSTLFPNFGSMFSVAEQQQAKGDWDAESQREGEDYGSDHGGDDIEDSLQSPLISRQATSVEGKEIAAPHGSIMGAVGRSS SLMQGGEAVSSMGIGGGWQLAWKWTEREGADGEKEGGFQRIYLHEEGVTGDRRGSILSLPGGDVPPGGEFVQAAALVSQPALYSKELMEQRLAGPAMVHP SQAVAKGPKWADLFEPGVKHALFVGIGIQILQQFAGINGVLYYTPQILEQAGVGVLLANIGLSSSSASILISGLTTLLMLPSIGIAMRLMDMSGRRFLLL ATIPILIVALAILILVNILDVGTMVHASLSTVSVILYFCFFVMGFGPIPNILCAEIFPTTVRGICIAICALTFWIGDIIVTYTLPVMLNAIGLAGVFGIY AVVCILAFLFVFMKVPETKGMPLEVITEFFSVGAKQAKED |
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GO Analysis |
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| Presence of Splice variants | YES | ||||