| RGAP LOCUS ID |
LOC_Os10g39130 |
| RAP-DB ID |
Os10g0536100 |
| Function |
OsMADS56 - MADS-box family gene with MIKCc type-box, expressed |
Sub-cellular Localization
Predictions |
1) WoLF-PSORT Prediction |
| localization |
Nuclear |
| score |
13 |
2) CELLO
Prediction
|
| localization |
Nuclear |
| score |
2.995 |
3) NUCPRED
Prediction
|
| localization |
Non Nuclear |
| score |
0.68 |
4) Y-Loc
Prediction
|
| localization |
Nuclear |
| score |
100 |
| confidence value |
0.97 |
| Number Of Software Predicting Nucleus |
3 |
| Seed Specific |
No |
| Transcription factor category |
MIKC_MADS |
Experimental evidence for
subcellular localization |
| Published gene name (updated 1 January 2020) |
OsMADS56 |
| Function assigned as per literature |
|
| Subcellular localization as per literature |
Nucleus |
| Cells used for localization experiment |
Onion epidermal cell |
| NUCLEAR or Not Nuclear |
NUCLEAR |
| PMID |
25096925 |
| Reference of localization |
https://academic.oup.com/jxb/article/65/18/5339/2885032 |
| Is Subcellular localization evidence by author available ?
|
No |
Sequence Analysis
|
| Number of PAT4 |
0 |
| Number of PAT7 |
0 |
| Number of Bipartite |
1 |
| Basic residues % |
0.176 |
| NLS score |
0.02 |
| Protein Sequence |
>LOC_Os10g39130.1 protein
MVRGRTELKRIENPTSRQVTFSKRRNGLLKKAFELSVLCDAEVALIVFSPRGRLYEFASAPSLQKTIDRYKAYTKDHVNNKTIQQDIQQVKDDTLGLAKK
LEALDESRRKILGENLEGFSIEELRGLEMKLEKSLHKIRLKKTELLEQQIAKLKEKERTLLKDNENLRGKHRNLEAAALVANHMTTTTAPAAWPRDVPMT
SSTAGAADAMDVETDLYIGLPGTERSSNRSETG |
GO Analysis |
| 1 |
| GO Category |
Cellular comBiological Processonent |
| GO Term |
nucleus |
|
| 2 |
| GO Category |
Biological Process |
| GO Term |
multicellular organismal development |
|
| 3 |
| GO Category |
Molecular Function |
| GO Term |
protein binding |
|
| 4 |
| GO Category |
Biological Process |
| GO Term |
biosynthetic process |
|
| 5 |
| GO Category |
Biological Process |
| GO Term |
nucleobase, nucleoside, nucleotide and nucleic acid metabolic process |
|
| 6 |
| GO Category |
Biological Process |
| GO Term |
response to stress |
|
| 7 |
| GO Category |
Biological Process |
| GO Term |
response to abiotic stimulus |
|
| 8 |
| GO Category |
Molecular Function |
| GO Term |
sequence-specific DNA binding transcription factor activity |
|
| Presence of Splice variants |
YES |
