| RGAP LOCUS ID |
LOC_Os10g39120 |
| RAP-DB ID |
Os10g0536000 |
| Function |
ubiquitin-conjugating enzyme, putative, expressed |
Sub-cellular Localization
Predictions |
1) WoLF-PSORT Prediction |
| localization |
Nuclear |
| score |
12 |
2) CELLO
Prediction
|
| localization |
Nuclear |
| score |
1.783 |
3) NUCPRED
Prediction
|
| localization |
Non Nuclear |
| score |
0.27 |
4) Y-Loc
Prediction
|
| localization |
Chloroplast |
| score |
5 |
| confidence value |
0.08 |
| Number Of Software Predicting Nucleus |
2 |
| Seed Specific |
No |
| Transcription factor category |
|
Experimental evidence for
subcellular localization |
| Published gene name (updated 1 January 2020) |
OsSCE1 |
| Function assigned as per literature |
OsSCE1 alters the biomass and grain yield parameters in rice |
| Subcellular localization as per literature |
Nucleus |
| Cells used for localization experiment |
epidermal cells in the root tissues |
| NUCLEAR or Not Nuclear |
NUCLEAR |
| PMID |
31212102 |
| Reference of localization |
https://www.sciencedirect.com/science/article/pii/S0176161719300914?via%3Dihub |
| Is Subcellular localization evidence by author available ?
|
No |
Sequence Analysis
|
| Number of PAT4 |
0 |
| Number of PAT7 |
1 |
| Number of Bipartite |
0 |
| Basic residues % |
0.119 |
| NLS score |
-0.13 |
| Protein Sequence |
>LOC_Os10g39120.1 protein
MSGGIARGRLAEERKAWRKNHPHGFVAKPETMADGSANLMIWHCTIPGKQGTDWEGGYYPLTLHFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNE
DSGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYHIFIQDKPEYKRRVRVQAKQYPALL |
GO Analysis |
| 1 |
| GO Category |
Biological Process |
| GO Term |
protein modification process |
|
| 2 |
| GO Category |
Cellular comBiological Processonent |
| GO Term |
nucleus |
|
| 3 |
| GO Category |
Molecular Function |
| GO Term |
protein binding |
|
| 4 |
| GO Category |
Biological Process |
| GO Term |
reproduction |
|
| 5 |
| GO Category |
Biological Process |
| GO Term |
post-embryonic development |
|
| 6 |
| GO Category |
Biological Process |
| GO Term |
embryo development |
|
| 7 |
| GO Category |
Biological Process |
| GO Term |
response to endogenous stimulus |
|
| 8 |
| GO Category |
Molecular Function |
| GO Term |
catalytic activity |
|
| Presence of Splice variants |
YES |
