LOC_Os10g37640

Expression Profile

RGAP LOCUS ID LOC_Os10g37640
RAP-DB ID Os10g0520700
Function HIT zinc finger domain containing protein, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization chlo
score 3

2) CELLO Prediction
localization Nuclear
score 3.33

3) NUCPRED Prediction
localization Non Nuclear
score 0.6

4) Y-Loc Prediction
localization Nuclear
score 99.86
confidence value 0.94
Number Of Software Predicting Nucleus 2
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) LIP1
Function assigned as per literature LIP1 is involved in regulatation of rice leaf inclination through auxin signaling
Subcellular localization as per literature Nucleus and cytoplasm
Cells used for localization experiment Rice protoplasts and Nicotiana benthamiana leaves
NUCLEAR or Not Nuclear NUCLEAR
PMID 30496185
Reference of localization https://journals.plos.org/plosgenetics/article?id=10.1371/journal.pgen.1007829
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.117
NLS score -0.47
Protein Sequence >LOC_Os10g37640.1 protein
MEREVVVSEDAAASSSSSSSSAAAASFSLAETRVICRVCQKQFAQYTCPRCNARYCSLPCYKGHSVQCTESFMRENVMDELKQMQPEDESKKKMLDILKR
FHLEEEDMDSEGEDESILSEELIQKVMSGDEIKLEDLSDDEIKRFRQALASGELSKMIEPWTPWWKKPSARSISLSPDGSQLIRQVSVEDTDTSDPMADP
ESSISEIPEGPESALPSLEQLTRAEPSPLLAVHLVDILYSYCFTLRLHNGDWRSDPFGASTVALSVSKVMGEDAKPETVSEALTACIEETCSPAYRHTGG
FRFAIALVDDIISLLTLGGNALVCALCDFRRLIHIGERMLKAEKLGKAERSRSTQKLRAADRKLYFMTCWVHEQPNEAWSSLARLVEVQKASLEELDCGS
QFQRAGRKNDAQSKVLIEEI

GO Analysis
1
GO Category Molecular Function
GO Term molecular_function
2
GO Category Biological Process
GO Term biological_process
3
GO Category Cellular comBiological Processonent
GO Term plastid
Presence of Splice variants YES