LOC_Os10g35560

Expression Profile

RGAP LOCUS ID LOC_Os10g35560
RAP-DB ID Os10g0498700
Function expressed protein

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization Nuclear
score 10

2) CELLO Prediction
localization Nuclear
score 1.89

3) NUCPRED Prediction
localization Non Nuclear
score 0.61

4) Y-Loc Prediction
localization Nuclear
score 50.76
confidence value 0.05
Number Of Software Predicting Nucleus 3
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsSFR6
Function assigned as per literature
Subcellular localization as per literature NA
Cells used for localization experiment
NUCLEAR or Not Nuclear
PMID
Reference of localization
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 2
Number of PAT7 1
Number of Bipartite 0
Basic residues % 0.078
NLS score 0.52
Protein Sequence >LOC_Os10g35560.1 protein
MTSSSAPNPSPLVPTPTPSPPTANAAAAAAGAVPVSSPTPPPKDQQQEGQGGGGGVGDGGGVEEVGVGGGEAMEVDGGAGGGGGGVGDVEGGGGGGGAGG
GGGGGGGGQQASPATVFRIRLKQPPSSLRHKMRVPELCRNFSAVAWCGKLNAIACASETCARIPSSNSSPPFWIPIHILNPERPTECSVFNVKADSPRDF
VQFIEWSPRSCPRALLVANFHGRITIWTQPTKGPTNLVRDASSWQCEHEWRQDLSVVTKWLSGISPYRWLPANSSTSSNLKTFEEKFLTQQPQSSAGWPN
ILCVCSVFSSGSVQLHWSQWPSQNSAQPRWFSTSKGLLGAGPSGIMAADAIITETGALHVAGVPLVNPSTVVVWEVMPGLGNGIQATAKINATSSLPPSL
NPPLWAGFAPLASYLFSLQDYLVSEGAQTKKQAQVDNETTEVASIHCCPVSNFSAYVSPEAAAQSATTTTWGSGVTSVAFDPTRGGSVITVVIVEGQYMS
PYDPDEGPSITGWRVQCWESSVQPVVLHPIFGSPANFGGQPPTQTVWSTRVNKSIPPSEDLKNPQSYVPMPTTSDERSSSECSVDRANRLSFDPYDLPND
VRQLAQIVYSAHGGEVAVAFLRGGVHIFSGPNFEQVDSYHVNVGSAIAPPAFSSSGCCLASVWHDTLKDRTILKIIRVLPPAILNAQTKVSSAVWERAIA
DRFWWSLLAGVDWWDAVGCTQSAAEDGIVSLNSVIALLDADFHCLPTIQQRQQHCPNLDRIKCRLLEGTNAQDVRALVLDMQARLLLDMLGKGIESALIN
PSTLLPEPWQASSDMLSSIGPDKMTVDPALLLSIQGYVDAVLDLASHFITRLRRYASFCRTLASHAVGASSGSGNSRNMVTSPTNSSPSPSTNQGNQGGV
ASTTGSSQMQEWVQGAIAKISNNTDGAANAAPNPISGRSSFMPISINTGTFPGTPAVRLIGDCHFLHRLCQLLLFCLLFRRRQSPRIPANAQKSSDSSMQ
KQHLMNSKTEDNTLAVRSGLGAAKLEDGTTSRGQMVGAKGAEENPVGNKSARIGSGNAGQGYTSDEVKVLFLILVDLCKRTATLQHPLPSSQVGSSNIII
RLHYIDGNYTVLPEVVEASLGPHMQNMPRPRGADAAGLLLRELELQPPAEEWHRRNMFGGPWSEPDDLGPLDNTRQLKINGSTNRHLSDMEEDGDSSFGI
QNLWPRKRRLSERDAAFGLKTSVGLGSFLGVMGSRRDVITAVWKTGLEGEWYKCIRCLRQTCAFAQPGALAPNTSNELEAWWISRWTHACPMCGGTWVKV
V

GO Analysis
1
GO Category Molecular Function
GO Term molecular_function
2
GO Category Cellular comBiological Processonent
GO Term nucleus
3
GO Category Biological Process
GO Term response to stress
4
GO Category Biological Process
GO Term response to abiotic stimulus
5
GO Category Biological Process
GO Term metabolic process
6
GO Category Biological Process
GO Term reproduction
7
GO Category Biological Process
GO Term post-embryonic development
Presence of Splice variants YES