LOC_Os10g35200

Expression Profile

RGAP LOCUS ID LOC_Os10g35200
RAP-DB ID Os10g0494800
Function katanin p80 WD40 repeat-containing subunit B1 homolog 1, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization Nuclear
score 4

2) CELLO Prediction
localization Nuclear
score 2.142

3) NUCPRED Prediction
localization Non Nuclear
score 0.69

4) Y-Loc Prediction
localization Nuclear
score 44.45
confidence value 0.12
Number Of Software Predicting Nucleus 3
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsKTN80a
Function assigned as per literature
Subcellular localization as per literature NA
Cells used for localization experiment
NUCLEAR or Not Nuclear
PMID
Reference of localization https://onlinelibrary.wiley.com/doi/epdf/10.1111/jipb.12170
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 1
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.122
NLS score -0.16
Protein Sequence >LOC_Os10g35200.1 protein
MATKRAYKLQEFVAHASDVNCVKFGRKTSRILITGGEDQKVNLWAIGKPSSILSLSGLTSPVESVSFDSSEAMIGAGASSGTIKIWDVDEAKVVRTFTGH
RSSCASLDFHPFGEFFASGSSDTNMKIWDMRKKGCIHTYKGHTRRIDVLRFTPDGRWIVSGGSDNSVKIWDLTAGKLLHDFRNHEGPINCLDFHPHEFLL
ATGSADKTVKFWDLETFELIGSSGPENSREYFVPASVVRSMTFNKDGKSLFCGLHESLKVLSWEPIICHDVVDVGWSTLGDLIVHEGKLLGCSYNQSCAG
IWVVDLMKIEPYAVSIAEAHLNESVNRSIQADNSISSVLGRLSVSRSPAKEASSDTLLKLSMSASKEVPVPASSAVTKKLPKEPITSNIRLTRSDSLPVV
SPRVRLNPKFSDDQKRQTDYAVPITTPRIRSKVDLSIGARAFHRNSVPSVAPTNRSRSKISAYSSEGSSFIPVVVPRHIPKVDSGPNLSKVLTTDLTIVE
PQDIERGGLAVDCGEDDKLVCVIDSRSSNMGVQNGRRRKAGDIITHKETPETALTVNMDRDFRRKAPETESMQQDIFHSEPISSKCKYIKETSGAGDINL
SGSAITESVKSNEGGDWYNASSFVKPNLTVGRNPETSYINRRTMFGLRHSTDSSEKHAVEHGPSNLSASYERNQYAPTLHNLRRRSSVAREQSASAGDED
DIADLMENHQEFIHAVKSRLTKLEVVYRCWHNNDVKGSIDATRRIQDLDVTADIISVLMENDNSITLDICTCVLPLASSVLEKSSYDRHLKVALEMILKL
VKSFGSTISSAVSSTPPVGVDIEAEQRLNRCNLCFLELIKVHSVLFALTRRQGEVGRSAQELSLFLQDIFQLTSR

GO Analysis
1
GO Category Cellular comBiological Processonent
GO Term intracellular
2
GO Category Molecular Function
GO Term protein binding
3
GO Category Molecular Function
GO Term nucleotide binding
4
GO Category Biological Process
GO Term biological_process
Presence of Splice variants No