LOC_Os10g35180

Expression Profile

RGAP LOCUS ID LOC_Os10g35180
RAP-DB ID Os10g0494300
Function white-brown complex homolog protein 11, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization cyto
score 4

2) CELLO Prediction
localization PlasmaMembrane
score 4.725

3) NUCPRED Prediction
localization Non Nuclear
score 0.15

4) Y-Loc Prediction
localization Cytoplasm
score 91
confidence value 0.69
Number Of Software Predicting Nucleus 0
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsABCG26
Function assigned as per literature OsABCG26 is mainly responsible for the transport of lipidic molecules from tapetal cells to anther wall layers
Subcellular localization as per literature Plasma membrane
Cells used for localization experiment onion (Allium cepa) epidermal cells
NUCLEAR or Not Nuclear NOT NUCLEAR
PMID 26392263
Reference of localization http://www.plantphysiol.org/content/169/3/2064.long
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.101
NLS score -0.47
Protein Sequence >LOC_Os10g35180.1 protein
MKKQGGGGGVAAAAVAAAGMVKAELEDVGIKAAGGAVAALSPLSETLWREKAAAEFLGDVSARLAWRDLTVTVVLGGGGGGGGGGTTQDVLQGLTGHAEP
GTITALMGPSGSGKSTLLDALAGRLAANAFLDGTVLLNGRKANLSFGAAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPMEEKRALVEGTIVEMGLQD
CADTVVGNWHLRGISGGEKRRVSIALEILMRPRLLFLDEPTSGLDSASAFFVTQTLRGLARDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGLASE
ACQFFAQAGFPCPPLRNPSDHFLRCINADFDKVKATLKGSMKRRFERSDDPLDRIMTSEAIRRLITYYKNSQYYFAAQQKVNEMARVKGTVLDAGGSQAS
FWMQAFTLTKRSFINMSRDFGYYWLRLIIYIVVTVCIGTIYLNVGTRYSSILARGACASFVFGFVTFMSIGGFPSFVEDMKVFQRERLNGHYGVLAFVIS
NTISAMPFLILITFISGTMCYFMVRLHPGFTHYLFFVLCLYASVTVVESLMMAIASVIPNFLMGIIIGAGIQGIFMLVSGYFRLPHDIPKPFWRYPMSYI
SFHYWALQGQYQNDLKGLVFDNQDDELPKIPGEYILENVFQIDVSRSKWLDLAVLFSMIFIYRLLFFAMIKVSEDVTPWVRGYVARRRVQGKGARGRGAD
LSAARSPSLRAYVVDAADDLPPA

GO Analysis
1
GO Category Biological Process
GO Term response to stress
2
GO Category Biological Process
GO Term transport
3
GO Category Biological Process
GO Term cellular process
4
GO Category Cellular comBiological Processonent
GO Term plasma membrane
5
GO Category Molecular Function
GO Term hydrolase activity
6
GO Category Molecular Function
GO Term transporter activity
7
GO Category Biological Process
GO Term response to endogenous stimulus
8
GO Category Biological Process
GO Term catabolic process
9
GO Category Biological Process
GO Term nucleobase, nucleoside, nucleotide and nucleic acid metabolic process
10
GO Category Biological Process
GO Term response to abiotic stimulus
Presence of Splice variants No