LOC_Os10g34540

Expression Profile

RGAP LOCUS ID LOC_Os10g34540
RAP-DB ID Os10g0486900
Function tetratricopeptide repeat protein 1, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization Nuclear
score 8

2) CELLO Prediction
localization Nuclear
score 1.83

3) NUCPRED Prediction
localization Non Nuclear
score 0.3

4) Y-Loc Prediction
localization Nuclear
score 93.11
confidence value 0.91
Number Of Software Predicting Nucleus 3
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsTPR1
Function assigned as per literature OsTPR1 competitively binds MoChia1, thereby allowing the accumulation of free chitin and re-establishing the immune response
Subcellular localization as per literature Plasma membrane
Cells used for localization experiment Rice protoplasts
NUCLEAR or Not Nuclear NOT NUCLEAR
PMID 30610168
Reference of localization http://www.plantcell.org/content/31/1/172.long
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 0
Number of Bipartite 1
Basic residues % 0.131
NLS score 0.02
Protein Sequence >LOC_Os10g34540.1 protein
MVVIEQEPEVEETPAAAEEPAAEEQAAGGAAGGEAARADGEDEEEAFEDALTDEQLREKARSQANDAKAEGNKFFGAGEYERALSQYETALQIAAELESA
EDIRSACHSNRAVCFLKLGKYDETIKECTKALELNPSYLKALLRRGEAHEKLEHYDEAIADMKKIIELDPSNEQAKRSLFRLEPLAAEKREKMKEEMIGK
LKDLGNSVLGRFGMSVDNFKAVKDPNTGSYSISFQQ

GO Analysis
1
GO Category Cellular comBiological Processonent
GO Term cellular_component
2
GO Category Molecular Function
GO Term protein binding
Presence of Splice variants No