| RGAP LOCUS ID |
LOC_Os10g34520 |
| RAP-DB ID |
Os10g0486600 |
| Function |
mitosis protein dim1, putative, expressed |
Sub-cellular Localization
Predictions |
1) WoLF-PSORT Prediction |
| localization |
cyto |
| score |
9 |
2) CELLO
Prediction
|
| localization |
Cytoplasmic |
| score |
2.078 |
3) NUCPRED
Prediction
|
| localization |
Non Nuclear |
| score |
0 |
4) Y-Loc
Prediction
|
| localization |
Cytoplasm |
| score |
82 |
| confidence value |
0.24 |
| Number Of Software Predicting Nucleus |
0 |
| Seed Specific |
No |
| Transcription factor category |
|
Experimental evidence for
subcellular localization |
| Published gene name (updated 1 January 2020) |
OsDim1 |
| Function assigned as per literature |
OsDim1 plays an important role in seedling growth and pollen tube elongation, and has pleiotropic effects on reproductive tissues |
| Subcellular localization as per literature |
Nucleus |
| Cells used for localization experiment |
Onion epidermal cells |
| NUCLEAR or Not Nuclear |
NUCLEAR |
| PMID |
31811256 |
| Reference of localization |
https://www.nature.com/articles/s41598-019-54898-1 |
| Is Subcellular localization evidence by author available ?
|
No |
Sequence Analysis
|
| Number of PAT4 |
0 |
| Number of PAT7 |
0 |
| Number of Bipartite |
0 |
| Basic residues % |
0.106 |
| NLS score |
-0.47 |
| Protein Sequence |
>LOC_Os10g34520.1 protein
MSYLLPHLHSGWAVDQAILAEEERLVIIRFGHDWDETCMQMDEVLAAVAETIKNFAVIYLVDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNN
KINWALKDKQEFIDIVETVYRGARKGRGLVIAPKDYSTKYRY |
GO Analysis |
| 1 |
| GO Category |
Cellular comBiological Processonent |
| GO Term |
nucleus |
|
| 2 |
| GO Category |
Biological Process |
| GO Term |
metabolic process |
|
| 3 |
| GO Category |
Biological Process |
| GO Term |
multicellular organismal development |
|
| 4 |
| GO Category |
Molecular Function |
| GO Term |
catalytic activity |
|
| 5 |
| GO Category |
Cellular comBiological Processonent |
| GO Term |
cytoplasm |
|
| 6 |
| GO Category |
Biological Process |
| GO Term |
cellular component organization |
|
| 7 |
| GO Category |
Biological Process |
| GO Term |
cell cycle |
|
| Presence of Splice variants |
No |
