LOC_Os10g32540

Expression Profile

RGAP LOCUS ID LOC_Os10g32540
RAP-DB ID Os10g0462800
Function SAP domain containing protein, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization chlo
score 13

2) CELLO Prediction
localization Cytoplasmic
score 1.546

3) NUCPRED Prediction
localization Non Nuclear
score 0.59

4) Y-Loc Prediction
localization Nuclear
score 66.71
confidence value 0.1
Number Of Software Predicting Nucleus 1
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsWSL3
Function assigned as per literature OsWSL3 is essential for early chloroplast development in rice
Subcellular localization as per literature chloroplast
Cells used for localization experiment Rice protoplasts and Nicotiana benthamiana epidermal cells
NUCLEAR or Not Nuclear NOT NUCLEAR
PMID 27573887
Reference of localization https://link.springer.com/article/10.1007%2Fs11103-016-0533-0
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 1
Number of PAT7 1
Number of Bipartite 0
Basic residues % 0.127
NLS score 0.27
Protein Sequence >LOC_Os10g32540.1 protein
MATPTPTPSTSAPAAPPSSAFPLTAAARFPRARAASASTSSTRASALAERRRTRRRRLPEGSGGGGDRSAAAGAVEKGLRLAFLEQLAERARAADAAGVA
DAIYDMVAAGLSPGPRSFHGLVAAHVLAGDAEGAMQSLRRELSSGVRPLHETFVALVRVFAKKGLATRGMEILAAMERYKYDIRKAWLILVEELVNNNYL
EDANTVFLKGTEGGLQGTDEIYDLLIEEDCKAGDHSNALTVAYKMEASGRMATTFHFNCLLSVQATCGIPEIAFATFENMEYGGEGYMKPDTESYNWVIQ
AFTRATSYDRAGDVAELLGMMVEDHKRIQPNARTYALLVECFTKYSMVNEAIRHFRALRRIPGGTKVLYNEGNCGDPLSLYLRSLCLDGRADELLEALEA
MSNDGQTIAPRAMILNRKYRTLVSTWIEPLQEEADVGFEIDYVARYIEEGGLTGERKRWVPRRGKTPLDPDEFGFAYSNPIETSFKQRCFEELKLYHRKL
LITLRNEGPGILGDVSEDDVRRVIERLKKLVVGPKKNVVKPKAASKMVVSELKTELEAQGLPTDGTRQVLYQRVQKARRINRSRGIPLWVPPVEDEEEVD
EELDELISRIKLEDGNTEFWKRRFLGETRNYLCEEVNDEEDADLDDDELDDDDDEDDDDDDTTKGEEDEIDEEDAVEQTENQAGDETKDKPSKGPKQHLQ
MIGVQLLKDLEKTSVSSKKSKRVPEIDDDEDWFPEDPIEAFKVMRETRLFDVSDMYTTADAWGWTWEREIKNKMPRKWSQEWEVELAIKIMHKVIDLGGT
PTIGDCAIILRAAMRVPLPSAFMTILQTTHSLGYKFGSPLYDEAILLCLDLEEIDAAIAVVAEMETNGIKVPDETLDKVLAAKQSGGNSALQPPPAEE

GO Analysis
1
GO Category Cellular comBiological Processonent
GO Term plastid
2
GO Category Cellular comBiological Processonent
GO Term membrane
3
GO Category Molecular Function
GO Term DNA binding
4
GO Category Cellular comBiological Processonent
GO Term nucleus
5
GO Category Cellular comBiological Processonent
GO Term intracellular
6
GO Category Molecular Function
GO Term nucleic acid binding
Presence of Splice variants No