LOC_Os10g30850

Expression Profile

RGAP LOCUS ID LOC_Os10g30850
RAP-DB ID Os10g0445400
Function zinc finger, RING-type, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization chlo
score 5.5

2) CELLO Prediction
localization PlasmaMembrane
score 2.507

3) NUCPRED Prediction
localization Non Nuclear
score 0.11

4) Y-Loc Prediction
localization Chloroplast
score 5
confidence value 0.15
Number Of Software Predicting Nucleus 0
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsHCI1
Function assigned as per literature OsHCI1 plays an important role in regulation of heat-generated signals in plants
Subcellular localization as per literature Golgi apparatus and punctuate spots which rapidly moved to the nucleus under heat shock
Cells used for localization experiment Tobacco leaves and rice protoplasts
NUCLEAR or Not Nuclear NUCLEAR
PMID 23698632
Reference of localization https://academic.oup.com/jxb/article/64/10/2899/542627
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.134
NLS score -0.47
Protein Sequence >LOC_Os10g30850.1 protein
MSCEFFLPSPVAARGRWWWWGVCVWFISLFCRASEFLRDYDGAVIQMRMAYSAVAHFLVQWIDCKLAGALGLLKIMIYKVYADGTTALPEWEREASIRQF
YGVIFPSLLQLPSGITELDDRKQRRLCLQKFRKVEERVSEVDLERELECGICLEVNAKIVLPDCAHSLCMRCFEDWNTKSKSCPFCRACLKKVNPSSLWL
YTDDRDVVDMDTLTRENIRRLFMFISKLPLVVLHVVDLDIYEYRIK

GO Analysis
1
GO Category Cellular comBiological Processonent
GO Term cellular_component
2
GO Category Molecular Function
GO Term binding
3
GO Category Biological Process
GO Term biological_process
Presence of Splice variants YES