LOC_Os10g30580

Expression Profile

RGAP LOCUS ID LOC_Os10g30580
RAP-DB ID Os10g0442600
Function cell division control protein 48 homolog E, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization cyto
score 10

2) CELLO Prediction
localization Cytoplasmic
score 3.667

3) NUCPRED Prediction
localization Non Nuclear
score 0.45

4) Y-Loc Prediction
localization Cytoplasm
score 89
confidence value 0.73
Number Of Software Predicting Nucleus 0
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsCDC48E
Function assigned as per literature OsCDC48/48E complex is required to modulate cellular processes and plant survival in rice.
Subcellular localization as per literature Nucleus and cytoplasm
Cells used for localization experiment Rice protoplasts
NUCLEAR or Not Nuclear NUCLEAR
PMID 30937701
Reference of localization https://link.springer.com/article/10.1007%2Fs11103-019-00851-9
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 1
Number of PAT7 2
Number of Bipartite 0
Basic residues % 0.135
NLS score 0.7
Protein Sequence >LOC_Os10g30580.1 protein
MASQGEPSSSADPKGKKDYSTAILERKKSPNRLVVDEATNDDNSVVALHPDTMERLQLFRGDTVLLKGKKRKDTICIVLADETCEEPKIRMNKVVRKNLR
VRLGDVVSVHQCQDVKYGKRVHILPIDDTVEGITGNLFDAFLKPYFLEAYRPVRKGDLFLVRGGMRSVEFKVIETDPTEYCIVAPDTEIFCDGEPIKRED
EERLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAE
KNAPSIIFIDEIDSIAPKREKTNGEVERRIVSQLLTLMDGLKARSHVIVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLAEDV
DLELIAKDTHGYVGADLAALCTEAALQCIREKMDIIDLEDETIDAEILNSMAVTNDHFKTALGTSNPSALRETVVEVPNVSWEDIGGLENVKRELQETVQ
YPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAG
GAADRVLNQLLTEMDGMNAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEQSRLQIFKACLRKSPVAKDVDLNALAKYTQGFSGADITEICQRA
CKYAIRENIEKDIERERRSKENPEAMEEDEVDDIAEIKAAHFEESMKYARRSVSDADIRKYQAFAQTLQQSRGFGSEFRFERTEAGAGAAADPFASAAAV
ADDDDLYS

GO Analysis
1
GO Category Molecular Function
GO Term protein binding
2
GO Category Cellular comBiological Processonent
GO Term cell wall
3
GO Category Cellular comBiological Processonent
GO Term cytosol
4
GO Category Biological Process
GO Term catabolic process
5
GO Category Biological Process
GO Term nucleobase, nucleoside, nucleotide and nucleic acid metabolic process
6
GO Category Molecular Function
GO Term hydrolase activity
Presence of Splice variants YES