LOC_Os10g28600
| RGAP LOCUS ID | LOC_Os10g28600 | ||||
| RAP-DB ID | Os10g0421800 | ||||
| Function | PPR repeat domain containing protein, putative, expressed | ||||
Sub-cellular Localization Predictions |
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1) WoLF-PSORT Prediction |
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| localization | chlo | ||||
| score | 11 | ||||
2) CELLO Prediction |
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| localization | Cytoplasmic | ||||
| score | 1.601 | ||||
3) NUCPRED Prediction |
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| localization | Non Nuclear | ||||
| score | 0.18 | ||||
4) Y-Loc Prediction |
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| localization | Chloroplast | ||||
| score | 9 | ||||
| confidence value | 0.84 | ||||
| Number Of Software Predicting Nucleus | 0 | ||||
| Seed Specific | No | ||||
| Transcription factor category | |||||
Experimental evidence for subcellular localization |
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| Published gene name (updated 1 January 2020) | TCD10 | ||||
| Function assigned as per literature | TCD10 encodes a novel rice PPR protein, mainly located in chloroplasts, which is important for chloroplastdevelopment, growth and the maintenance of photosynthetic electron transpor | ||||
| Subcellular localization as per literature | Chloroplasts | ||||
| Cells used for localization experiment | tobacco cells | ||||
| NUCLEAR or Not Nuclear | NOT NUCLEAR | ||||
| PMID | 27910002 | ||||
| Reference of localization | https://link.springer.com/article/10.1186/s12284-016-0134-1 | ||||
| Is Subcellular localization evidence by author available ? | No | ||||
Sequence Analysis |
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| Number of PAT4 | 1 | ||||
| Number of PAT7 | 1 | ||||
| Number of Bipartite | 0 | ||||
| Basic residues % | 0.116 | ||||
| NLS score | 0.21 | ||||
| Protein Sequence | >LOC_Os10g28600.1 protein MLEVCCCSGVLGGSPPSSRTAGVSSPGLSPSRPSKRRIGRARVQPRAPPPCDERRAAEDVIHALRSADGPAEALERFRSAARKPRVAHTTASCNYMLELM RGHGRVGDMAEVFDVMQRQIVKANVGTFAAIFGGLGVEGGLRSAPVALPVMKEAGIVLNAYTYNGLVYFLVKSGFDREALEVYRVMMVDGVVPSVRTYSV LMVAFGKRRDVETVLWLLREMEAHGVKPNVYSYTICIRVLGQAKRFDEAYRILAKMENEGCKPDVITHTVLIQVLCDAGRISDAKDVFWKMKKSDQKPDR VTYITLLDKFGDNGDSQSVMEIWNAMKADGYNDNVVAYTAVIDALCQVGRVFEALEMFDEMKQKGIVPEQYSYNSLISGFLKADRFGDALELFKHMDIHG PKPNGYTHVLFINYYGKSGESIKAIQRYELMKSKGIVPDVVAGNAVLFGLAKSGRLGMAKRVFHELKAMGVSPDTITYTMMIKCCSKASKFDEAVKIFYD MIENNCVPDVLAVNSLIDTLYKAGRGDEAWRIFYQLKEMNLEPTDGTYNTLLAGLGREGKVKEVMHLLEEMYHSNYPPNLITYNTILDCLCKNGAVNDAL DMLYSMTTKGCIPDLSSYNTVIYGLVKEERYNEAFSIFCQMKKVLIPDYATLCTILPSFVKIGLMKEALHIIKDYFLQPGSKTDRSSCHSLMEGILKKAG IEKSIEFAEIIASSGITLDDFFLCPLIKHLCKQKKALEAHELVKKFKSFGVSLKTGLYNSLICGLVDENLIDIAEGLFAEMKELGCGPDEFTYNLLLDAM GKSMRIEEMLKVQEEMHRKGYESTYVTYNTIISGLVKSRRLEQAIDLYYNLMSQGFSPTPCTYGPLLDGLLKAGRIEDAENLFNEMLEYGCKANCTIYNI LLNGHRIAGNTEKVCHLFQDMVDQGINPDIKSYTIIIDTLCKAGQLNDGLTYFRQLLEMGLEPDLITYNLLIDGLGKSKRLEEAVSLFNEMQKKGIVPNL YTYNSLILHLGKAGKAAEAGKMYEELLTKGWKPNVFTYNALIRGYSVSGSTDSAYAAYGRMIVGGCLPNSSTYMQLPNQL |
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GO Analysis |
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| 1 |
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| Presence of Splice variants | No | ||||